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r-quantiseqr 1.16.0
Propagated dependencies: r-tidyr@1.3.1 r-summarizedexperiment@1.38.1 r-rlang@1.1.6 r-preprocesscore@1.70.0 r-mass@7.3-65 r-limsolve@1.5.7.2 r-ggplot2@3.5.2 r-biobase@2.68.0
Channel: guix-bioc
Location: guix-bioc/packages/q.scm (guix-bioc packages q)
Home page: https://bioconductor.org/packages/quantiseqr
Licenses: GPL 3
Synopsis: Quantification of the Tumor Immune contexture from RNA-seq data
Description:

This package provides a streamlined workflow for the quanTIseq method, developed to perform the quantification of the Tumor Immune contexture from RNA-seq data. The quantification is performed against the TIL10 signature (dissecting the contributions of ten immune cell types), carefully crafted from a collection of human RNA-seq samples. The TIL10 signature has been extensively validated using simulated, flow cytometry, and immunohistochemistry data.

Total results: 1