r-rogue 2.1.6
Propagated dependencies: r-treetools@1.13.1 r-treedist@2.9.2 r-rfast@2.1.0 r-rdpack@2.6.1 r-matrixstats@1.4.1 r-fastmatch@1.1-4 r-cli@3.6.3 r-ape@5.8
Channel: guix-cran
Home page: https://github.com/ms609/Rogue/
Licenses: GPL 3+
Synopsis: Identify Rogue Taxa in Sets of Phylogenetic Trees
Description:
Rogue ("wildcard") taxa are leaves with uncertain phylogenetic position. Their position may vary from tree to tree under inference methods that yield a tree set (e.g. bootstrapping, Bayesian tree searches, maximum parsimony). The presence of rogue taxa in a tree set can potentially remove all information from a consensus tree. The information content of a consensus tree - a function of its resolution and branch support values - can often be increased by removing rogue taxa. Rogue provides an explicitly information-theoretic approach to rogue detection (Smith 2022) <doi:10.1093/sysbio/syab099>, and an interface to RogueNaRok
(Aberer et al. 2013) <doi:10.1093/sysbio/sys078>.
Total results: 1