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r-scanmir 1.16.0
Propagated dependencies: r-stringi@1.8.7 r-seqlogo@1.76.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-pwalign@1.6.0 r-iranges@2.44.0 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-data-table@1.17.8 r-cowplot@1.2.0 r-biostrings@2.78.0 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://bioconductor.org/packages/scanMiR
Licenses: GPL 3
Build system: r
Synopsis: scanMiR
Description:

This package provides a set of tools for working with miRNA affinity models (KdModels), efficiently scanning for miRNA binding sites, and predicting target repression. It supports scanning using miRNA seeds, full miRNA sequences (enabling 3 alignment) and KdModels, and includes the prediction of slicing and TDMD sites. Finally, it includes utility and plotting functions (e.g. for the visual representation of miRNA-target alignment).

Total results: 1