_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
r-scpipe 2.12.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-vctrs@0.7.3 r-tidyr@1.3.2 r-tibble@3.3.1 r-testthat@3.3.2 r-summarizedexperiment@1.42.0 r-stringr@1.6.0 r-singlecellexperiment@1.34.0 r-scales@1.4.0 r-s4vectors@0.50.1 r-rtracklayer@1.72.0 r-rsubread@2.26.0 r-rsamtools@2.28.0 r-robustbase@0.99-7 r-rlang@1.2.0 r-rhtslib@3.8.0 r-reticulate@1.46.0 r-reshape@0.8.10 r-rcpp@1.1.1-1.1 r-purrr@1.2.2 r-org-mm-eg-db@3.23.0 r-org-hs-eg-db@3.23.1 r-multiassayexperiment@1.38.0 r-mclust@6.1.2 r-matrix@1.7-5 r-mass@7.3-65 r-magrittr@2.0.5 r-iranges@2.46.0 r-hash@2.2.6.4 r-glue@1.8.1 r-ggplot2@4.0.3 r-ggally@2.4.0 r-genomicranges@1.64.0 r-genomicalignments@1.48.0 r-flexmix@2.3-20 r-dropletutils@1.32.0 r-dplyr@1.2.1 r-data-table@1.18.4 r-biostrings@2.80.1 r-biomart@2.68.0 r-biocgenerics@0.58.1 r-basilisk@1.24.0 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://github.com/LuyiTian/scPipe
Licenses: GPL 2+
Build system: r
Synopsis: Pipeline for single cell multi-omic data pre-processing
Description:

This package provides a preprocessing pipeline for single cell RNA-seq/ATAC-seq data that starts from the fastq files and produces a feature count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

Total packages: 1