_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
r-scpipe 2.10.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-vctrs@0.6.5 r-tidyr@1.3.1 r-tibble@3.2.1 r-testthat@3.2.3 r-summarizedexperiment@1.38.1 r-stringr@1.5.1 r-singlecellexperiment@1.30.1 r-scales@1.4.0 r-s4vectors@0.46.0 r-rtracklayer@1.68.0 r-rsubread@2.22.1 r-rsamtools@2.24.0 r-robustbase@0.99-4-1 r-rlang@1.1.6 r-rhtslib@3.4.0 r-reticulate@1.42.0 r-reshape@0.8.9 r-rcpp@1.0.14 r-purrr@1.0.4 r-org-mm-eg-db@3.21.0 r-org-hs-eg-db@3.21.0 r-multiassayexperiment@1.34.0 r-mclust@6.1.1 r-matrix@1.7-3 r-mass@7.3-65 r-magrittr@2.0.3 r-iranges@2.42.0 r-hash@2.2.6.3 r-glue@1.8.0 r-ggplot2@3.5.2 r-ggally@2.2.1 r-genomicranges@1.60.0 r-genomicalignments@1.44.0 r-flexmix@2.3-20 r-dropletutils@1.28.0 r-dplyr@1.1.4 r-data-table@1.17.4 r-biostrings@2.76.0 r-biomart@2.64.0 r-biocgenerics@0.54.0 r-basilisk@1.20.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://github.com/LuyiTian/scPipe
Licenses: GPL 2+
Synopsis: Pipeline for single cell multi-omic data pre-processing
Description:

This package provides a preprocessing pipeline for single cell RNA-seq/ATAC-seq data that starts from the fastq files and produces a feature count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

Total results: 1