_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
r-shortread 1.64.0
Dependencies: zlib@1.3
Propagated dependencies: r-biobase@2.66.0 r-biocgenerics@0.52.0 r-biocparallel@1.40.0 r-biostrings@2.74.0 r-genomeinfodb@1.42.0 r-genomicalignments@1.42.0 r-genomicranges@1.58.0 r-hwriter@1.3.2.1 r-iranges@2.40.0 r-lattice@0.22-6 r-latticeextra@0.6-30 r-pwalign@1.2.0 r-rhtslib@3.2.0 r-rsamtools@2.22.0 r-s4vectors@0.44.0 r-xvector@0.46.0 r-zlibbioc@1.52.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/ShortRead
Licenses: Artistic License 2.0
Synopsis: FASTQ input and manipulation tools
Description:

This package implements sampling, iteration, and input of FASTQ files. It includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

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