_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
r-spicyr 1.22.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-survival@3.8-3 r-summarizedexperiment@1.40.0 r-spatstat-geom@3.6-1 r-spatstat-explore@3.6-0 r-spatialexperiment@1.20.0 r-singlecellexperiment@1.32.0 r-simpleseg@1.12.0 r-scam@1.2-20 r-scales@1.4.0 r-s4vectors@0.48.0 r-rlang@1.1.6 r-pheatmap@1.0.13 r-magrittr@2.0.4 r-lmertest@3.1-3 r-lifecycle@1.0.4 r-ggthemes@5.1.0 r-ggplot2@4.0.1 r-ggnewscale@0.5.2 r-ggh4x@0.3.1 r-ggforce@0.5.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-coxme@2.2-22 r-concaveman@1.2.0 r-cli@3.6.5 r-classifyr@3.14.0 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://sydneybiox.github.io/spicyR/
Licenses: FSDG-compatible
Synopsis: Spatial analysis of in situ cytometry data
Description:

The spicyR package provides a framework for performing inference on changes in spatial relationships between pairs of cell types for cell-resolution spatial omics technologies. spicyR consists of three primary steps: (i) summarizing the degree of spatial localization between pairs of cell types for each image; (ii) modelling the variability in localization summary statistics as a function of cell counts and (iii) testing for changes in spatial localizations associated with a response variable.

Total results: 1