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r-ssizerna 1.3.3
Propagated dependencies: r-ssize-fdr@1.3 r-qvalue@2.38.0 r-mass@7.3-61 r-limma@3.62.1 r-edger@4.4.0 r-biobase@2.66.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=ssizeRNA
Licenses: GPL 2+
Synopsis: Sample Size Calculation for RNA-Seq Experimental Design
Description:

We propose a procedure for sample size calculation while controlling false discovery rate for RNA-seq experimental design. Our procedure depends on the Voom method proposed for RNA-seq data analysis by Law et al. (2014) <DOI:10.1186/gb-2014-15-2-r29> and the sample size calculation method proposed for microarray experiments by Liu and Hwang (2007) <DOI:10.1093/bioinformatics/btl664>. We develop a set of functions that calculates appropriate sample sizes for two-sample t-test for RNA-seq experiments with fixed or varied set of parameters. The outputs also contain a plot of power versus sample size, a table of power at different sample sizes, and a table of critical test values at different sample sizes. To install this package, please use source("http://bioconductor.org/biocLite.R"); biocLite("ssizeRNA")'. For R version 3.5 or greater, please use if(!requireNamespace("BiocManager", quietly = TRUE))install.packages("BiocManager"); BiocManager::install("ssizeRNA")'.

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