r-supercell 1.1
Propagated dependencies: r-weights@1.1.2 r-umap@0.2.10.0 r-scales@1.4.0 r-rtsne@0.17 r-rlang@1.1.6 r-rann@2.6.2 r-proxy@0.4-27 r-plyr@1.8.9 r-plotfunctions@1.4 r-patchwork@1.3.2 r-matrixstats@1.5.0 r-matrix@1.7-4 r-irlba@2.3.5.1 r-igraph@2.2.1 r-hmisc@5.2-4 r-ggplot2@4.0.1 r-entropy@1.3.2 r-dbscan@1.2.3 r-corpcor@1.6.10
Channel: guix-cran
Home page: https://cran.r-project.org/package=SuperCell
Licenses: GPL 3
Synopsis: Simplification of scRNA-Seq Data by Merging Together Similar Cells
Description:
Aggregates large single-cell data into metacell dataset by merging together gene expression of very similar cells. SuperCell uses velocyto.R <doi:10.1038/s41586-018-0414-6> <https://github.com/velocyto-team/velocyto.R> for RNA velocity and WeightedCluster <doi:10.12682/lives.2296-1658.2013.24> <https://mephisto.unige.ch/weightedcluster/> for weighted clustering on metacells. We also recommend installing scater Bioconductor package <doi:10.18129/B9.bioc.scater> <https://bioconductor.org/packages/release/bioc/html/scater.html>.
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