_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
r-tcgabiolinks 2.34.0
Propagated dependencies: r-biomart@2.62.0 r-data-table@1.16.2 r-downloader@0.4 r-dplyr@1.1.4 r-genomicranges@1.58.0 r-ggplot2@3.5.1 r-httr@1.4.7 r-iranges@2.40.0 r-jsonlite@1.8.9 r-knitr@1.49 r-plyr@1.8.9 r-purrr@1.0.2 r-r-utils@2.12.3 r-readr@2.1.5 r-rvest@1.0.4 r-s4vectors@0.44.0 r-stringr@1.5.1 r-summarizedexperiment@1.36.0 r-tcgabiolinksgui-data@1.26.0 r-tibble@3.2.1 r-tidyr@1.3.1 r-xml@3.99-0.17 r-xml2@1.3.6
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/BioinformaticsFMRP/TCGAbiolinks
Licenses: GPL 3+
Synopsis: Integrative analysis with GDC data
Description:

The aim of TCGAbiolinks is:

  1. facilitate GDC open-access data retrieval;

  2. prepare the data using the appropriate pre-processing strategies;

  3. provide the means to carry out different standard analyses, and;

  4. to easily reproduce earlier research results.

In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

Total results: 2