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r-tilingarray 1.86.0
Propagated dependencies: r-affy@1.86.0 r-biobase@2.68.0 r-genefilter@1.90.0 r-pixmap@0.4-13 r-rcolorbrewer@1.1-3 r-strucchange@1.5-4 r-vsn@3.76.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/tilingArray
Licenses: Artistic License 2.0
Synopsis: Transcript mapping with high-density oligonucleotide tiling arrays
Description:

The package provides functionality that can be useful for the analysis of the high-density tiling microarray data (such as from Affymetrix genechips) or for measuring the transcript abundance and the architecture. The main functionalities of the package are:

  1. the class segmentation for representing partitionings of a linear series of data;

  2. the function segment for fitting piecewise constant models using a dynamic programming algorithm that is both fast and exact;

  3. the function confint for calculating confidence intervals using the strucchange package;

  4. the function plotAlongChrom for generating pretty plots;

  5. the function normalizeByReference for probe-sequence dependent response adjustment from a (set of) reference hybridizations.

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