Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.
API method:
GET /api/packages?search=hello&page=1&limit=20
where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned
in response headers.
If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
GCTA (Genome-wide Complex Trait Analysis) is a software package initially developed to estimate the proportion of phenotypic variance explained by all genome-wide SNPs for a complex trait but has been greatly extended for many other analyses of data from genome-wide association studies (GWASs).
Python bindings to spoa.
Fastp is a tool designed to provide fast all-in-one preprocessing for FastQ files. This tool has multi-threading support to afford high performance.
Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.
Inference of ploidy and heterozygosity structure using whole genome sequencing data.
Reference-free profiling of polyploid genomes.
phase genomic variants using DNA sequencing reads.
FastDup is a tool designed to locate and tag duplicate reads in a coordinate-sorted SAM or BAM file. It uses the same core algorithm as Picard MarkDuplicates to produce identical results and utilizes spdlog for logging, with the default level set to 'info'.
Minibwa aligns short reads against a reference genome. It is the successor of bwa-mem with a different algorithm. Minibwa is over three times as fast as the original bwa-mem and twice as fast as bwa-mem2 at comparable accuracy. While minibwa works with accurate long reads, minimap2 is more robust under high error rate.
Expected Genettic Relationship Matrix computation
R package for wavelet variance and correlation decompositions of genomic signals, averaging across chromosomes (or more generally any set of multiple temporal or spatial signals).
A fast K-mer counter for high-fidelity shotgun datasets.
SHAPEIT5 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data.
Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)
This package provides a fast structural variation caller for long-read sequencing data.
This package provides Site frequency spectrum estimation based on window expectation-maximisation algorithm.
Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.
Expected Genettic Relationship Matrix computation
SFS parsing with site filtration and annotation, from VCF, Zarr, or tree sequences.
A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy.
This package provides Bindings to libdeflate for DEFLATE (de)compression exposed as non-streaming buffer operations. Contains bindings for raw deflate, zlib, and gzip data.
This package provides Site frequency spectrum estimation based on window expectation-maximisation algorithm.