_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


python-dendropy 4.5.1
Propagated dependencies: python-setuptools@80.9.0
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://dendropy.org/
Licenses: Modified BSD
Synopsis: Library for phylogenetics and phylogenetic computing
Description:

DendroPy is a library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.

blast+ 2.17.0
Dependencies: bzip2@1.0.8 lmdb@0.9.29 zlib@1.3.1 pcre@8.45 perl@5.36.0 python-wrapper@3.11.14
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://blast.ncbi.nlm.nih.gov
Licenses: Public Domain Expat Boost 1.0 LGPL 2.0+ ASL 2.0
Synopsis: Basic local alignment search tool
Description:

BLAST is a popular method of performing a DNA or protein sequence similarity search, using heuristics to produce results quickly. It also calculates an “expect value” that estimates how many matches would have occurred at a given score by chance, which can aid a user in judging how much confidence to have in an alignment.

r-cytobackbone 1.0.0-1.4c1a0a3
Propagated dependencies: r-flowcore@2.22.0 r-flowutils@1.59.0 r-fnn@1.1.4.1 r-ggplot2@4.0.1 r-preprocesscore@1.72.0
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/tchitchek-lab/CytoBackBone
Licenses: GPL 2
Synopsis: Merge phenotype information from different cytometric profiles
Description:

This package implements an algorithm which increases the number of simultaneously measurable markers and in this way helps with study of the immune responses. Thus, the present algorithm, named CytoBackBone, allows combining phenotypic information of cells from different cytometric profiles obtained from different cytometry panels. This computational approach is based on the principle that each cell has its own phenotypic and functional characteristics that can be used as an identification card. CytoBackBone uses a set of predefined markers, that we call the backbone, to define this identification card. The phenotypic information of cells with similar identification cards in the different cytometric profiles is then merged.

python-splicekit 0.7
Propagated dependencies: python-beautifulsoup4@4.14.3 python-dateutil@2.9.0 python-levenshtein@0.27.1 python-logomaker@0.8.7 python-numpy@1.26.4 python-pandas@2.2.3 python-plotly@5.20.0 python-psutil@7.0.0 python-pybio@0.3.12-1.c91fddc python-pysam@0.23.0 python-rangehttpserver@1.4.0 python-requests@2.32.5 python-scanrbp@0.3
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/bedapub/splicekit
Licenses: GPL 3
Synopsis: Python toolkit for splicing analysis from short-read RNA-seq
Description:

Splicekit is a modular platform for splicing analysis from short-read RNA-seq datasets. The platform also integrates pybio for genomic operations and scanRBP for RNA-protein binding studies. The whole analysis is self-contained (one single directory) and the platform is written in Python, in a modular way.

r-imagearray 1.0-1.78b4b18
Propagated dependencies: r-delayedarray@0.36.0 r-hdf5array@1.38.0 r-magick@2.9.0 r-s4arrays@1.10.0 r-zarrarray@1.0-1.508d871
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/BIMSBbioinfo/ImageArray
Licenses: Expat
Synopsis: DelayedArray based image operations
Description:

DelayedArray based image operations.

r-demuxmix 1.1.1-1.09a7918
Propagated dependencies: r-ggplot2@4.0.1 r-gridextra@2.3 r-mass@7.3-65 r-matrix@1.7-4
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/huklein/demuxmix
Licenses: Artistic License 2.0
Synopsis: Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models
Description:

This package is used for demultiplexing single-cell sequencing experiments of pooled cells. These cells are labeled with barcode oligonucleotides. The package implements methods to fit regression mixture models for a probabilistic classification of cells, including multiplet detection. Demultiplexing error rates can be estimated, and methods for quality control are provided.

java-biojava-phylo 4.0.0
Propagated dependencies: java-log4j-api@2.17.1 java-log4j-core@2.17.1 java-slf4j-api@1.7.25 java-slf4j-simple@1.7.25 java-biojava-core@4.0.0 java-forester@1.005
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://biojava.org
Licenses: LGPL 2.1+
Synopsis: Biojava interface to the forester phylogenomics library
Description:

The phylo module provides a biojava interface layer to the forester phylogenomics library for constructing phylogenetic trees.

pigx-sars-cov2-ww 0.0.9
Dependencies: bash-minimal@5.2.37 bedtools@2.31.1 bwa@0.7.18 ensembl-vep@112 fastp@0.23.2 fastqc@0.11.9 ivar@1.4.4 kraken2@2.1.2 krona-tools@2.8 lofreq@2.1.5 multiqc@1.14 python-pyyaml@6.0.2 python-wrapper@3.11.14 r-base64url@1.4 r-data-table@1.17.8 r-deconvr@1.16.0 r-dplyr@1.1.4 r-dt@0.34.0 r-ggplot2@4.0.1 r-htmltools@0.5.8.1 r-jsonlite@2.0.0 r-knitr@1.50 r-magrittr@2.0.4 r-mass@7.3-65 r-minimal@4.5.2 r-plotly@4.11.0 r-qpcr@1.4-2 r-r-utils@2.13.0 r-reshape2@1.4.5 r-rmarkdown@2.30 r-stringr@1.6.0 r-tidyr@1.3.1 r-viridis@0.6.5 samtools@1.19 snakemake@7.32.4 wget@1.25.0
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://bioinformatics.mdc-berlin.de/pigx/
Licenses: GPL 3+
Synopsis: Analysis pipeline for wastewater sequencing
Description:

PiGx SARS-CoV-2 is a pipeline for analysing data from sequenced wastewater samples and identifying given variants-of-concern of SARS-CoV-2. The pipeline can be used for continuous sampling. The output report will provide an intuitive visual overview about the development of variant abundance over time and location.

bison 3.0.5
Dependencies: flex@2.6.4
Propagated dependencies: m4@1.4.19
Channel: guix
Location: gnu/packages/bison.scm (gnu packages bison)
Home page: https://www.gnu.org/software/bison/
Licenses: GPL 3+
Synopsis: Yacc-compatible parser generator
Description:

GNU Bison is a general-purpose parser generator. It can build a deterministic or generalized LR parser from an annotated, context-free grammar. It is versatile enough to have many applications, from parsers for simple tools through complex programming languages.

Bison also provides an implementation of yacc, as specified by POSIX.

bison 3.8.2
Dependencies: flex@2.6.4
Propagated dependencies: m4@1.4.19
Channel: guix
Location: gnu/packages/bison.scm (gnu packages bison)
Home page: https://www.gnu.org/software/bison/
Licenses: GPL 3+
Synopsis: Yacc-compatible parser generator
Description:

GNU Bison is a general-purpose parser generator. It can build a deterministic or generalized LR parser from an annotated, context-free grammar. It is versatile enough to have many applications, from parsers for simple tools through complex programming languages.

Bison also provides an implementation of yacc, as specified by POSIX.

qbittorrent 5.1.2
Dependencies: boost@1.89.0 libtorrent-rasterbar@2.0.11 openssl@3.0.8 python-wrapper@3.11.14 qtsvg@6.9.2 zlib@1.3.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://www.qbittorrent.org/
Licenses: GPL 2+
Synopsis: Graphical BitTorrent client
Description:

qBittorrent is a BitTorrent client programmed in C++/Qt that uses libtorrent (sometimes called libtorrent-rasterbar) by Arvid Norberg.

It aims to be a good alternative to all other BitTorrent clients out there. qBittorrent is fast, stable and provides unicode support as well as many features.

deluge 2.2.0
Dependencies: bash-minimal@5.2.37
Propagated dependencies: gtk+@3.24.51 libtorrent-rasterbar@2.0.11 nss-certs@3.101.4 python-pycairo@1.28.0 python-chardet@5.2.0 python-dbus@1.2.18 python-mako@1.3.10 python-pygobject@3.50.0 python-pillow@11.1.0 python-pyopenssl@24.3.0 python-pyxdg@0.28 python-rencode@1.0.8 python-service-identity@24.2.0 python-setproctitle@1.3.7 python-twisted@25.5.0 python-zope-interface@7.2
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://www.deluge-torrent.org/
Licenses: GPL 3+
Synopsis: Fully-featured cross-platform ​BitTorrent client
Description:

Deluge contains the common features to BitTorrent clients such as Protocol Encryption, DHT, Local Peer Discovery (LSD), Peer Exchange (PEX), UPnP, NAT-PMP, Proxy support, Web seeds, global and per-torrent speed limits. Deluge heavily utilises the libtorrent library. It is designed to run as both a normal standalone desktop application and as a client-server.

aria2 1.37.0
Dependencies: c-ares@1.34.4 gnutls@3.8.3 gmp@6.3.0 libssh2@1.10.0 libxml2@2.14.6 nettle@3.10.1 sqlite@3.39.3 wslay@1.1.1 zlib@1.3.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://aria2.github.io/
Licenses: GPL 2+
Synopsis: Utility for parallel downloading files
Description:

Aria2 is a lightweight, multi-protocol & multi-source command-line download utility. It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink. Aria2 can be manipulated via built-in JSON-RPC and XML-RPC interfaces.

qbittorrent-enhanced 5.1.2.10
Dependencies: boost@1.89.0 libtorrent-rasterbar@2.0.11 openssl@3.0.8 python-wrapper@3.11.14 qtsvg@6.9.2 zlib@1.3.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://github.com/c0re100/qBittorrent-Enhanced-Edition
Licenses: GPL 2+
Synopsis: Graphical BitTorrent client
Description:

qBittorrent Enhanced is a bittorrent client based on qBittorrent with the following features:

  • Auto Ban Xunlei, QQ, Baidu, Xfplay, DLBT and Offline downloader

  • Auto Ban Unknown Peer from China Option (Default: OFF)

  • Auto Update Public Trackers List (Default: OFF)

  • Auto Ban BitTorrent Media Player Peer Option (Default: OFF)

  • Peer whitelist/blacklist

tremc 0.9.3-1.d8deaa5
Dependencies: python@3.11.14
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://github.com/tremc/tremc
Licenses: GPL 3+
Synopsis: Console client for the Transmission BitTorrent daemon
Description:

Tremc is a console client, with a curses interface, for the Transmission BitTorrent daemon.

qbittorrent-enhanced-no-x 5.1.2.10
Dependencies: boost@1.89.0 libtorrent-rasterbar@2.0.11 openssl@3.0.8 python-wrapper@3.11.14 zlib@1.3.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://github.com/c0re100/qBittorrent-Enhanced-Edition
Licenses: GPL 2+
Synopsis: Graphical BitTorrent client
Description:

qBittorrent Enhanced is a bittorrent client based on qBittorrent with the following features:

  • Auto Ban Xunlei, QQ, Baidu, Xfplay, DLBT and Offline downloader

  • Auto Ban Unknown Peer from China Option (Default: OFF)

  • Auto Update Public Trackers List (Default: OFF)

  • Auto Ban BitTorrent Media Player Peer Option (Default: OFF)

  • Peer whitelist/blacklist

stig 0.14.1a0
Dependencies: python@3.11.14
Propagated dependencies: python-urwid@3.0.3 python-urwidtrees@1.0.4 python-aiohttp@3.11.11 python-aiohttp-socks@0.10.1 python-pyxdg@0.28 python-blinker@1.9.0 python-natsort@8.4.0 python-async-timeout@5.0.1 python-setproctitle@1.3.7
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://github.com/rndusr/stig
Licenses: GPL 3
Synopsis: TUI and CLI for the BitTorrent client Transmission
Description:

Stig is a TUI and CLI client for the BitTorrent client Transmission.

mktorrent 1.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://github.com/Rudde/mktorrent
Licenses: Public Domain GPL 2+
Synopsis: Utility to create BitTorrent metainfo files
Description:

mktorrent is a simple command-line utility to create BitTorrent metainfo files, often known simply as torrents, from both single files and whole directories. It can add multiple trackers and web seed URLs, and set the private flag to disallow advertisement through the distributed hash table (DHT) and Peer Exchange. Hashing is multi-threaded and will take advantage of multiple processor cores where possible.

rtorrent 0.16.1
Dependencies: libtorrent@0.16.1 ncurses@6.2.20210619 curl@8.6.0 cyrus-sasl@2.1.28 openssl@3.0.8 zlib@1.3.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://github.com/rakshasa/rtorrent
Licenses: GPL 2+
Synopsis: BitTorrent client with ncurses interface
Description:

rTorrent is a BitTorrent client with an ncurses interface. It supports full encryption, DHT, PEX, and Magnet Links. It can also be controlled via XML-RPC over SCGI.

uget 2.2.1
Dependencies: curl@8.6.0 gtk+@3.24.51 glib@2.83.3 gnutls@3.8.3 gstreamer@1.26.3 libgcrypt@1.11.0 libnotify@0.8.3 openssl@3.0.8
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://ugetdm.com/
Licenses: LGPL 2.1+
Synopsis: Universal download manager with GTK+ interface
Description:

uGet is portable download manager with GTK+ interface supporting HTTP, HTTPS, BitTorrent and Metalink, supporting multi-connection downloads, download scheduling, download rate limiting.

libtorrent-rasterbar 2.0.11
Dependencies: boost@1.83.0 openssl@3.0.8
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://www.libtorrent.org/
Licenses: FreeBSD
Synopsis: Feature-complete BitTorrent implementation
Description:

libtorrent-rasterbar is a feature-complete C++ BitTorrent implementation focusing on efficiency and scalability. It runs on embedded devices as well as desktops.

qbittorrent-enhanced-nox 5.1.2.10
Dependencies: boost@1.89.0 libtorrent-rasterbar@2.0.11 openssl@3.0.8 python-wrapper@3.11.14 zlib@1.3.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://github.com/c0re100/qBittorrent-Enhanced-Edition
Licenses: GPL 2+
Synopsis: Graphical BitTorrent client
Description:

qBittorrent Enhanced is a bittorrent client based on qBittorrent with the following features:

  • Auto Ban Xunlei, QQ, Baidu, Xfplay, DLBT and Offline downloader

  • Auto Ban Unknown Peer from China Option (Default: OFF)

  • Auto Update Public Trackers List (Default: OFF)

  • Auto Ban BitTorrent Media Player Peer Option (Default: OFF)

  • Peer whitelist/blacklist

qbittorrent-nox 5.1.2
Dependencies: boost@1.89.0 libtorrent-rasterbar@2.0.11 openssl@3.0.8 python-wrapper@3.11.14 zlib@1.3.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://www.qbittorrent.org/
Licenses: GPL 2+
Synopsis: Graphical BitTorrent client
Description:

qBittorrent is a BitTorrent client programmed in C++/Qt that uses libtorrent (sometimes called libtorrent-rasterbar) by Arvid Norberg.

It aims to be a good alternative to all other BitTorrent clients out there. qBittorrent is fast, stable and provides unicode support as well as many features.

qbittorrent-no-x 5.1.2
Dependencies: boost@1.89.0 libtorrent-rasterbar@2.0.11 openssl@3.0.8 python-wrapper@3.11.14 zlib@1.3.1
Channel: guix
Location: gnu/packages/bittorrent.scm (gnu packages bittorrent)
Home page: https://www.qbittorrent.org/
Licenses: GPL 2+
Synopsis: Graphical BitTorrent client
Description:

qBittorrent is a BitTorrent client programmed in C++/Qt that uses libtorrent (sometimes called libtorrent-rasterbar) by Arvid Norberg.

It aims to be a good alternative to all other BitTorrent clients out there. qBittorrent is fast, stable and provides unicode support as well as many features.

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