_            _    _        _         _
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 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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GET /api/packages?search=hello&page=1&limit=20

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r-bsgenome-btaurus-ucsc-bostau3 1.4.0
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Btaurus.UCSC.bosTau3
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Bos taurus (UCSC version bosTau3)
Description:

Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects.

r-bsgenome-vvinifera-urgi-iggp12xv0 0.1
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Vvinifera.URGI.IGGP12Xv0
Licenses: CC0
Build system: r
Synopsis: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 12Xv0)
Description:

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv0) and available at the URGI (INRA).

r-bandle 1.14.0
Propagated dependencies: r-tidyr@1.3.1 r-s4vectors@0.48.0 r-robustbase@0.99-6 r-rlang@1.1.6 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-rcolorbrewer@1.1-3 r-prolocdata@1.48.0 r-proloc@1.50.0 r-plyr@1.8.9 r-msnbase@2.36.0 r-lbfgs@1.2.1.2 r-knitr@1.50 r-gtools@3.9.5 r-gridextra@2.3 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-ggalluvial@0.12.5 r-dplyr@1.1.4 r-coda@0.19-4.1 r-circlize@0.4.16 r-biocstyle@2.38.0 r-biocparallel@1.44.0 r-biobase@2.70.0 r-bh@1.87.0-1
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: http://github.com/ococrook/bandle
Licenses: Artistic License 2.0
Build system: r
Synopsis: An R package for the Bayesian analysis of differential subcellular localisation experiments
Description:

The Bandle package enables the analysis and visualisation of differential localisation experiments using mass-spectrometry data. Experimental methods supported include dynamic LOPIT-DC, hyperLOPIT, Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure to analyse these data.

r-bsgenome-mmusculus-ucsc-mm8 1.4.0
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm8
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Mus musculus (UCSC version mm8)
Description:

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects.

r-breastsubtyper 1.2.0
Propagated dependencies: r-withr@3.0.2 r-tidyselect@1.2.1 r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-rlang@1.1.6 r-rcolorbrewer@1.1-3 r-magrittr@2.0.4 r-impute@1.84.0 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-edger@4.8.0 r-e1071@1.7-16 r-dplyr@1.1.4 r-data-table@1.17.8 r-complexheatmap@2.26.0 r-circlize@0.4.16 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://doi.org/10.18129/B9.bioc.BreastSubtypeR
Licenses: GPL 3
Build system: r
Synopsis: Cohort-aware methods for intrinsic molecular subtyping of breast cancer
Description:

BreastSubtypeR provides an assumption-aware, multi-method framework for intrinsic molecular subtyping of breast cancer. The package harmonizes several published nearest-centroid (NC) and single-sample predictor (SSP) classifiers, supplies method-specific preprocessing and robust probe-to-gene mapping, and implements a cohort-aware AUTO mode that selectively enables classifiers compatible with the cohort composition. A local Shiny app (iBreastSubtypeR) is included for interactive analyses and to support users without programming experience.

r-batchcorr 1.0.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-reshape@0.8.10 r-mclust@6.1.2 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://github.com/MetaboComp/batchCorr
Licenses: GPL 2
Build system: r
Synopsis: Within And Between Batch Correction Of LC-MS Metabolomics Data
Description:

From the perspective of metabolites as the continuation of the central dogma of biology, metabolomics provides the closest link to many phenotypes of interest. This makes metabolomics research promising in teasing apart the complexities of living systems. However, due to experimental reasons, the data includes non-biological variation which limits quality and reproducibility, especially if the data is obtained from several batches. The batchCorr package reduces unwanted variation by way of between-batch alignment, within-batch drift correction and between-batch normalization using batch-specific quality control samples and long-term reference QC samples. Please see the associated article for more thorough descriptions of algorithms.

r-bsgenome-tguttata-ucsc-taegut1 1.4.0
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Tguttata.UCSC.taeGut1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Taeniopygia guttata (UCSC version taeGut1)
Description:

Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects.

r-beadarrayexampledata 1.47.0
Propagated dependencies: r-biobase@2.70.0 r-beadarray@2.58.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/beadarrayExampleData
Licenses: GPL 2
Build system: r
Synopsis: Example data for the beadarray package
Description:

An small dataset that can be used to run examples from the beadarray vignette and examples.

r-borealis 1.14.0
Propagated dependencies: r-snow@0.4-4 r-rlang@1.1.6 r-r-utils@2.13.0 r-purrr@1.2.0 r-plyr@1.8.9 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-gamlss-dist@6.1-1 r-gamlss@5.5-0 r-foreach@1.5.2 r-dss@2.58.0 r-dplyr@1.1.4 r-doparallel@1.0.17 r-cowplot@1.2.0 r-bsseq@1.46.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/borealis
Licenses: GPL 3
Build system: r
Synopsis: Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution
Description:

Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.

r-bsgenome-mdomestica-ucsc-mondom5 1.4.2
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Mdomestica.UCSC.monDom5
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Monodelphis domestica (UCSC version monDom5)
Description:

Full genome sequences for Monodelphis domestica (Opossum) as provided by UCSC (monDom5, Oct. 2006) and stored in Biostrings objects.

r-bsgenome-gaculeatus-ucsc-gasacu1-masked 1.3.99
Propagated dependencies: r-bsgenome-gaculeatus-ucsc-gasacu1@1.4.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Gaculeatus.UCSC.gasAcu1.masked
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full masked genome sequences for Gasterosteus aculeatus (UCSC version gasAcu1)
Description:

Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Gaculeatus.UCSC.gasAcu1, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-bsgenome-mmusculus-ucsc-mm39 1.4.3
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm39
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)
Description:

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (genome mm39, based on assembly GRCm39) and stored in Biostrings objects.

r-bsgenome-ggallus-ucsc-galgal4-masked 1.3.99
Propagated dependencies: r-bsgenome-ggallus-ucsc-galgal4@1.4.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Ggallus.UCSC.galGal4.masked
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full masked genome sequences for Gallus gallus (UCSC version galGal4)
Description:

Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ggallus.UCSC.galGal4, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-bsgenome-athaliana-tair-tair9 1.3.1000
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Athaliana.TAIR.TAIR9
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Arabidopsis thaliana (TAIR9)
Description:

Full genome sequences for Arabidopsis thaliana as provided by TAIR (TAIR9 Genome Release) and stored in Biostrings objects. Note that TAIR10 is an "annotation release" based on the same genome assembly as TAIR9.

r-buscorrect 1.28.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-gplots@3.2.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BUScorrect
Licenses: GPL 2+
Build system: r
Synopsis: Batch Effects Correction with Unknown Subtypes
Description:

High-throughput experimental data are accumulating exponentially in public databases. However, mining valid scientific discoveries from these abundant resources is hampered by technical artifacts and inherent biological heterogeneity. The former are usually termed "batch effects," and the latter is often modelled by "subtypes." The R package BUScorrect fits a Bayesian hierarchical model, the Batch-effects-correction-with-Unknown-Subtypes model (BUS), to correct batch effects in the presence of unknown subtypes. BUS is capable of (a) correcting batch effects explicitly, (b) grouping samples that share similar characteristics into subtypes, (c) identifying features that distinguish subtypes, and (d) enjoying a linear-order computation complexity.

r-browserviz 2.32.0
Propagated dependencies: r-jsonlite@2.0.0 r-httpuv@1.6.16 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://gladkia.github.io/BrowserViz/
Licenses: GPL 2
Build system: r
Synopsis: BrowserViz: interactive R/browser graphics using websockets and JSON
Description:

Interactvive graphics in a web browser from R, using websockets and JSON.

r-bsgenome-dvirilis-ensembl-dvircaf1 1.4.3
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Dvirilis.Ensembl.dvircaf1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Drosophila virilis (assembly dvir_caf1)
Description:

Full genome sequences for Drosophila virilis (assembly dvir_caf1, GenBank assembly accession GCA_000005245.1) as provided by Ensembl and stored in Biostrings objects.

r-bsgenome-drerio-ucsc-danrer6-masked 1.3.99
Propagated dependencies: r-bsgenome-drerio-ucsc-danrer6@1.4.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Drerio.UCSC.danRer6.masked
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full masked genome sequences for Danio rerio (UCSC version danRer6)
Description:

Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer6, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-bsubtilisprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/bsubtilisprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type bsubtilis
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Bsubtilis\_probe\_tab.

r-bloodgen3module 1.18.0
Propagated dependencies: r-v8@8.0.1 r-testthat@3.3.0 r-summarizedexperiment@1.40.0 r-reshape2@1.4.5 r-randomcolor@1.1.0.1 r-preprocesscore@1.72.0 r-matrixstats@1.5.0 r-limma@3.66.0 r-gtools@3.9.5 r-ggplot2@4.0.1 r-experimenthub@3.0.0 r-complexheatmap@2.26.0 r-circlize@0.4.16
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BloodGen3Module
Licenses: GPL 2
Build system: r
Synopsis: This R package for performing module repertoire analyses and generating fingerprint representations
Description:

The BloodGen3Module package provides functions for R user performing module repertoire analyses and generating fingerprint representations. Functions can perform group comparison or individual sample analysis and visualization by fingerprint grid plot or fingerprint heatmap. Module repertoire analyses typically involve determining the percentage of the constitutive genes for each module that are significantly increased or decreased. As we describe in details;https://www.biorxiv.org/content/10.1101/525709v2 and https://pubmed.ncbi.nlm.nih.gov/33624743/, the results of module repertoire analyses can be represented in a fingerprint format, where red and blue spots indicate increases or decreases in module activity. These spots are subsequently represented either on a grid, with each position being assigned to a given module, or in a heatmap where the samples are arranged in columns and the modules in rows.

r-bronchialil13 1.48.0
Propagated dependencies: r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: http://www.biostat.harvard.edu/~carey
Licenses: GPL 2
Build system: r
Synopsis: time course experiment involving il13
Description:

derived from CNMC (pepr.cnmcresearch.org) http://pepr.cnmcresearch.org/browse.do?action=list_prj_exp&projectId=95 Human Bronchial Cell line A549.

r-bsgenome-cjacchus-ucsc-caljac3 1.4.2
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Cjacchus.UCSC.calJac3
Licenses: Artistic License 2.0
Build system: r
Synopsis: Full genome sequences for Callithrix jacchus (UCSC version calJac3)
Description:

Full genome sequences for Callithrix jacchus (Marmoset) as provided by UCSC (calJac3, Mar. 2009) and stored in Biostrings objects.

r-beat 1.48.0
Propagated dependencies: r-shortread@1.68.0 r-genomicranges@1.62.0 r-bsgenome@1.78.0 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BEAT
Licenses: FSDG-compatible
Build system: r
Synopsis: BEAT - BS-Seq Epimutation Analysis Toolkit
Description:

Model-based analysis of single-cell methylation data.

r-bsgenome-vvinifera-urgi-iggp12xv2 0.1
Propagated dependencies: r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BSgenome.Vvinifera.URGI.IGGP12Xv2
Licenses: CC0
Build system: r
Synopsis: Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 12Xv2)
Description:

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv2) and available at the URGI (INRA).

Total results: 2909