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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-maskbad 1.54.0
Propagated dependencies: r-gcrma@2.82.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/maskBAD
Licenses: GPL 2+
Build system: r
Synopsis: Masking probes with binding affinity differences
Description:

Package includes functions to analyze and mask microarray expression data.

r-midashla 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/midasHLA
Licenses: FSDG-compatible
Build system: r
Synopsis: R package for immunogenomics data handling and association analysis
Description:

MiDAS is a R package for immunogenetics data transformation and statistical analysis. MiDAS accepts input data in the form of HLA alleles and KIR types, and can transform it into biologically meaningful variables, enabling HLA amino acid fine mapping, analyses of HLA evolutionary divergence, KIR gene presence, as well as validated HLA-KIR interactions. Further, it allows comprehensive statistical association analysis workflows with phenotypes of diverse measurement scales. MiDAS closes a gap between the inference of immunogenetic variation and its efficient utilization to make relevant discoveries related to T cell, Natural Killer cell, and disease biology.

r-mgu74av2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74av2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type mgu74av2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Av2\_probe\_tab.

r-mbqn 2.22.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/arianeschad/mbqn
Licenses: FSDG-compatible
Build system: r
Synopsis: Mean/Median-balanced quantile normalization
Description:

Modified quantile normalization for omics or other matrix-like data distorted in location and scale.

r-mafdb-exac-r1-0-nontcga-hs37d5 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.ExAC.r1.0.nonTCGA.hs37d5
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for hs37d5
Description:

Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version hs37d5.

r-medicagocdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/medicagocdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: medicagocdf
Description:

This package provides a package containing an environment representing the Medicago.cdf file.

r-mantelcorr 1.80.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MantelCorr
Licenses: GPL 2+
Build system: r
Synopsis: Compute Mantel Cluster Correlations
Description:

Computes Mantel cluster correlations from a (p x n) numeric data matrix (e.g. microarray gene-expression data).

r-msmb 1.28.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MSMB
Licenses: LGPL 2.0+
Build system: r
Synopsis: Data sets for the book 'Modern Statistics for Biology'
Description:

Data sets for the book Modern Statistics for Modern Biology', S.P. Holmes and W. Huber.

r-mirage 1.52.0
Propagated dependencies: r-s4vectors@0.48.0 r-biocmanager@1.30.27 r-biocgenerics@0.56.0 r-biobase@2.70.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MiRaGE
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: MiRNA Ranking by Gene Expression
Description:

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

r-metahdep 1.68.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/metahdep
Licenses: GPL 3
Build system: r
Synopsis: Hierarchical Dependence in Meta-Analysis
Description:

This package provides tools for meta-analysis in the presence of hierarchical (and/or sampling) dependence, including with gene expression studies.

r-miadash 1.2.0
Propagated dependencies: r-vegan@2.7-2 r-treesummarizedexperiment@2.18.0 r-summarizedexperiment@1.40.0 r-singlecellexperiment@1.32.0 r-shinywidgets@0.9.0 r-shinyjs@2.1.0 r-shinydashboard@0.7.3 r-shiny@1.11.1 r-scuttle@1.20.0 r-scater@1.38.0 r-s4vectors@0.48.0 r-rintrojs@0.3.4 r-mia@1.18.0 r-iseetree@1.4.0 r-isee@2.22.0 r-htmltools@0.5.8.1 r-bluster@1.20.0 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/microbiome/miaDash
Licenses: Artistic License 2.0
Build system: r
Synopsis: Dashboard for the interactive analysis and exploration of microbiome data
Description:

miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.

r-mofadata 1.26.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MOFAdata
Licenses: LGPL 3
Build system: r
Synopsis: Data package for Multi-Omics Factor Analysis (MOFA)
Description:

This package provides a collection of datasets to accompany the R package MOFA and illustrate running and analysing MOFA models.

r-mgu74ccdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74ccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mgu74ccdf
Description:

This package provides a package containing an environment representing the MG_U74C.cdf file.

r-mafdb-gnomadex-r2-1-grch38 3.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-genomicscores@2.22.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.gnomADex.r2.1.GRCh38
Licenses: Artistic License 2.0
Build system: r
Synopsis: Minor allele frequency data from gnomAD exomes release 2.1 for GRCh38
Description:

Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.1) for the human genome version GRCh38.

r-maizecdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/maizecdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: maizecdf
Description:

This package provides a package containing an environment representing the Maize.cdf file.

r-methylseekr 1.50.0
Propagated dependencies: r-rtracklayer@1.70.0 r-mhsmm@0.4.21 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-geneplotter@1.88.0 r-bsgenome@1.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MethylSeekR
Licenses: FSDG-compatible
Build system: r
Synopsis: Segmentation of Bis-seq data
Description:

This is a package for the discovery of regulatory regions from Bis-seq data.

r-mspms 1.2.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/baynec2/mspms
Licenses: Expat
Build system: r
Synopsis: Tools for the analysis of MSP-MS data
Description:

This package provides functions for the analysis of data generated by the multiplex substrate profiling by mass spectrometry for proteases (MSP-MS) method. Data exported from upstream proteomics software is accepted as input and subsequently processed for analysis. Tools for statistical analysis, visualization, and interpretation of the data are provided.

r-ncigraph 1.58.0
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: https://bioconductor.org/packages/NCIgraph
Licenses: GPL 3
Build system: r
Synopsis: Pathways from the NCI Pathways Database
Description:

This package provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

r-normalize450k 1.38.0
Propagated dependencies: r-quadprog@1.5-8 r-illuminaio@0.52.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: https://bioconductor.org/packages/normalize450K
Licenses: FreeBSD
Build system: r
Synopsis: Preprocessing of Illumina Infinium 450K data
Description:

Precise measurements are important for epigenome-wide studies investigating DNA methylation in whole blood samples, where effect sizes are expected to be small in magnitude. The 450K platform is often affected by batch effects and proper preprocessing is recommended. This package provides functions to read and normalize 450K .idat files. The normalization corrects for dye bias and biases related to signal intensity and methylation of probes using local regression. No adjustment for probe type bias is performed to avoid the trade-off of precision for accuracy of beta-values.

r-netprior 1.36.0
Propagated dependencies: r-sparsemvn@0.2.2 r-proc@1.19.0.1 r-matrix@1.7-4 r-gridextra@2.3 r-ggplot2@4.0.1 r-foreach@1.5.2 r-dplyr@1.1.4 r-doparallel@1.0.17
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: http://bioconductor.org/packages/netprioR
Licenses: GPL 3
Build system: r
Synopsis: model for network-based prioritisation of genes
Description:

This package provides a model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

r-ncgtw 1.24.0
Propagated dependencies: r-xcms@4.8.0 r-rcpp@1.1.0 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: https://bioconductor.org/packages/ncGTW
Licenses: GPL 2
Build system: r
Synopsis: Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection
Description:

The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.

r-netactivity 1.12.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-netactivitydata@1.12.0 r-deseq2@1.50.2 r-delayedmatrixstats@1.32.0 r-delayedarray@0.36.0 r-airway@1.30.0
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: https://bioconductor.org/packages/NetActivity
Licenses: Expat
Build system: r
Synopsis: Compute gene set scores from a deep learning framework
Description:

# NetActivity enables to compute gene set scores from previously trained sparsely-connected autoencoders. The package contains a function to prepare the data (`prepareSummarizedExperiment`) and a function to compute the gene set scores (`computeGeneSetScores`). The package `NetActivityData` contains different pre-trained models to be directly applied to the data. Alternatively, the users might use the package to compute gene set scores using custom models.

r-nucler 2.42.0
Propagated dependencies: r-shortread@1.68.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-magrittr@2.0.4 r-iranges@2.44.0 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-dplyr@1.1.4 r-biostrings@2.78.0 r-biocgenerics@0.56.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: https://bioconductor.org/packages/nucleR
Licenses: LGPL 3+
Build system: r
Synopsis: Nucleosome positioning package for R
Description:

Nucleosome positioning for Tiling Arrays and NGS experiments.

r-notamestats 1.0.0
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: https://github.com/hanhineva-lab/notameStats
Licenses: Expat
Build system: r
Synopsis: Workflow for non-targeted LC-MS metabolic profiling
Description:

This package provides univariate and multivariate statistics for feature prioritization in untargeted LC-MS metabolomics research.

Total results: 2911