_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-pd-poplar 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.poplar
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Poplar
Description:

Platform Design Info for The Manufacturer's Name Poplar.

r-pd-ecoli-asv2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ecoli.asv2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Ecoli_ASv2
Description:

Platform Design Info for The Manufacturer's Name Ecoli_ASv2.

r-pcan 1.38.0
Propagated dependencies: r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PCAN
Licenses: FSDG-compatible
Build system: r
Synopsis: Phenotype Consensus ANalysis (PCAN)
Description:

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

r-prince 1.26.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PrInCE
Licenses: FSDG-compatible
Build system: r
Synopsis: Predicting Interactomes from Co-Elution
Description:

PrInCE (Predicting Interactomes from Co-Elution) uses a naive Bayes classifier trained on dataset-derived features to recover protein-protein interactions from co-elution chromatogram profiles. This package contains the R implementation of PrInCE.

r-paeg1aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/paeg1aprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type paeg1a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was P\_aeg1a\_probe\_tab.

r-pd-hg-u95e 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95e
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95E
Description:

Platform Design Info for The Manufacturer's Name HG_U95E.

r-pathrender 1.78.0
Propagated dependencies: r-rgraphviz@2.54.0 r-rcolorbrewer@1.1-3 r-graph@1.88.0 r-cmap@1.15.1 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.bioconductor.org
Licenses: LGPL 2.0+
Build system: r
Synopsis: Render molecular pathways
Description:

build graphs from pathway databases, render them by Rgraphviz.

r-pathnet 1.50.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PathNet
Licenses: GPL 3
Build system: r
Synopsis: An R package for pathway analysis using topological information
Description:

PathNet uses topological information present in pathways and differential expression levels of genes (obtained from microarray experiment) to identify pathways that are 1) significantly enriched and 2) associated with each other in the context of differential expression. The algorithm is described in: PathNet: A tool for pathway analysis using topological information. Dutta B, Wallqvist A, and Reifman J. Source Code for Biology and Medicine 2012 Sep 24;7(1):10.

r-pd-mouse430a-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mouse430a.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Mouse430A_2
Description:

Platform Design Info for The Manufacturer's Name Mouse430A_2.

r-pd-aragene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.aragene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix AraGene-1_0-st
Description:

Platform Design Info for Affymetrix AraGene-1_0-st.

r-polystest 1.4.0
Propagated dependencies: r-upsetr@1.4.0 r-summarizedexperiment@1.40.0 r-shiny@1.11.1 r-s4vectors@0.48.0 r-qvalue@2.42.0 r-plotly@4.11.0 r-matrixstats@1.5.0 r-limma@3.66.0 r-knitr@1.50 r-heatmaply@1.6.0 r-gplots@3.2.0 r-fdrtool@1.2.18 r-circlize@0.4.16
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/computproteomics/PolySTest
Licenses: GPL 2
Build system: r
Synopsis: PolySTest: Detection of differentially regulated features. Combined statistical testing for data with few replicates and missing values
Description:

The complexity of high-throughput quantitative omics experiments often leads to low replicates numbers and many missing values. We implemented a new test to simultaneously consider missing values and quantitative changes, which we combined with well-performing statistical tests for high confidence detection of differentially regulated features. The package contains functions to run the test and to visualize the results.

r-pd-2006-07-18-hg18-refseq-promoter 1.8.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.2006.07.18.hg18.refseq.promoter
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter
Description:

Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter.

r-pd-bovgene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.bovgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix BovGene-1_0-st
Description:

Platform Design Info for Affymetrix BovGene-1_0-st.

r-pram 1.26.0
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-rsamtools@2.26.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicalignments@1.46.0 r-data-table@1.17.8 r-biocparallel@1.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/pliu55/pram
Licenses: GPL 3+
Build system: r
Synopsis: Pooling RNA-seq datasets for assembling transcript models
Description:

Publicly available RNA-seq data is routinely used for retrospective analysis to elucidate new biology. Novel transcript discovery enabled by large collections of RNA-seq datasets has emerged as one of such analysis. To increase the power of transcript discovery from large collections of RNA-seq datasets, we developed a new R package named Pooling RNA-seq and Assembling Models (PRAM), which builds transcript models in intergenic regions from pooled RNA-seq datasets. This package includes functions for defining intergenic regions, extracting and pooling related RNA-seq alignments, predicting, selected, and evaluating transcript models.

r-pd-zebgene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.zebgene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix ZebGene-1_1-st
Description:

Platform Design Info for Affymetrix ZebGene-1_1-st.

r-pathifier 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pathifier
Licenses: FSDG-compatible
Build system: r
Synopsis: Quantify deregulation of pathways in cancer
Description:

Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.

r-phyloprofiledata 1.24.0
Propagated dependencies: r-experimenthub@3.0.0 r-biostrings@2.78.0 r-biocstyle@2.38.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/BIONF/PhyloProfileData
Licenses: Expat
Build system: r
Synopsis: Data package for phylogenetic profile analysis using PhyloProfile tool
Description:

Two experimental datasets to illustrate running and analysing phylogenetic profiles with PhyloProfile package.

r-picb 1.2.0
Propagated dependencies: r-seqinr@4.2-36 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-openxlsx@4.2.8.1 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicalignments@1.46.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/HaaseLab/PICB
Licenses: CC0
Build system: r
Synopsis: piRNA Cluster Builder
Description:

piRNAs (short for PIWI-interacting RNAs) and their PIWI protein partners play a key role in fertility and maintaining genome integrity by restricting mobile genetic elements (transposons) in germ cells. piRNAs originate from genomic regions known as piRNA clusters. The piRNA Cluster Builder (PICB) is a versatile toolkit designed to identify genomic regions with a high density of piRNAs. It constructs piRNA clusters through a stepwise integration of unique and multimapping piRNAs and offers wide-ranging parameter settings, supported by an optimization function that allows users to test different parameter combinations to tailor the analysis to their specific piRNA system. The output includes extensive metadata columns, enabling researchers to rank clusters and extract cluster characteristics.

r-phantasuslite 1.8.0
Propagated dependencies: r-stringr@1.6.0 r-rhdf5client@1.32.0 r-httr@1.4.7 r-data-table@1.17.8 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/ctlab/phantasusLite/
Licenses: Expat
Build system: r
Synopsis: Loading and annotation RNA-seq counts matrices
Description:

PhantasusLite – a lightweight package with helper functions of general interest extracted from phantasus package. In parituclar it simplifies working with public RNA-seq datasets from GEO by providing access to the remote HSDS repository with the precomputed gene counts from ARCHS4 and DEE2 projects.

r-pd-hugene-2-0-st 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hugene.2.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix HuGene-2_0-st
Description:

Platform Design Info for Affymetrix HuGene-2_0-st.

r-pd-hg-u133-plus-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133.plus.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133_Plus_2
Description:

Platform Design Info for The Manufacturer's Name HG-U133_Plus_2.

r-pd-rg-u34c 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rg.u34c
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name RG_U34C
Description:

Platform Design Info for The Manufacturer's Name RG_U34C.

r-pd-mapping250k-nsp 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mapping250k.nsp
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Mapping250K_Nsp
Description:

Platform Design Info for Affymetrix Mapping250K_Nsp.

r-phenopath 1.34.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/phenopath
Licenses: ASL 2.0
Build system: r
Synopsis: Genomic trajectories with heterogeneous genetic and environmental backgrounds
Description:

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Total results: 2911