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  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-rwikipathways 1.30.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://github.com/wikipathways/rWikiPathways
Licenses: Expat
Build system: r
Synopsis: rWikiPathways - R client library for the WikiPathways API
Description:

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.

r-rrdp 1.44.0
Propagated dependencies: r-rjava@1.0-11 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://github.com/mhahsler/rRDP/
Licenses: FSDG-compatible
Build system: r
Synopsis: Interface to the RDP Classifier
Description:

This package installs and interfaces the naive Bayesian classifier for 16S rRNA sequences developed by the Ribosomal Database Project (RDP). With this package the classifier trained with the standard training set can be used or a custom classifier can be trained.

r-rnbeads-rn5 1.42.0
Propagated dependencies: r-genomicranges@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RnBeads.rn5
Licenses: GPL 3
Build system: r
Synopsis: RnBeads.rn5
Description:

Automatically generated RnBeads annotation package for the assembly rn5.

r-rnu34cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/rnu34cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: rnu34cdf
Description:

This package provides a package containing an environment representing the RN_U34.CDF file.

r-ragene10sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/ragene10sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix ragene10 annotation data (chip ragene10sttranscriptcluster)
Description:

Affymetrix ragene10 annotation data (chip ragene10sttranscriptcluster) assembled using data from public repositories.

r-rat2302frmavecs 0.99.11
Propagated dependencies: r-frma@1.62.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/rat2302frmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type rat2302rnentrezg
Description:

This package was created with the help of frmaTools version 1.24.0.

r-ragene10stv1cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/ragene10stv1cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: ragene10stv1cdf
Description:

This package provides a package containing an environment representing the RaGene-1_0-st-v1.cdf file.

r-rae230b-db 3.13.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/rae230b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix RAE230B Array annotation data (chip rae230b)
Description:

Affymetrix Affymetrix RAE230B Array annotation data (chip rae230b) assembled using data from public repositories.

r-rgsepd 1.42.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-org-hs-eg-db@3.22.0 r-gplots@3.2.0 r-goseq@1.62.0 r-go-db@3.22.0 r-deseq2@1.50.2 r-biomart@2.66.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/rgsepd
Licenses: GPL 3
Build system: r
Synopsis: Gene Set Enrichment / Projection Displays
Description:

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

r-rjmcmcnucleosomes 1.34.0
Dependencies: gsl@2.8
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rcpp@1.1.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-consensusseeker@1.38.0 r-biocparallel@1.44.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://github.com/ArnaudDroitLab/RJMCMCNucleosomes
Licenses: Artistic License 2.0
Build system: r
Synopsis: Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)
Description:

This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.

r-rta10transcriptcluster-db 8.8.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/rta10transcriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix rta10 annotation data (chip rta10transcriptcluster)
Description:

Affymetrix rta10 annotation data (chip rta10transcriptcluster) assembled using data from public repositories.

r-rankprod 3.36.0
Propagated dependencies: r-rmpfr@1.1-2 r-gmp@0.7-5
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RankProd
Licenses: FSDG-compatible
Build system: r
Synopsis: Rank Product method for identifying differentially expressed genes with application in meta-analysis
Description:

Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

r-rgug4130a-db 3.2.3
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/rgug4130a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Rat annotation data (chip rgug4130a)
Description:

Agilent Rat annotation data (chip rgug4130a) assembled using data from public repositories.

r-roastgsa 1.8.0
Propagated dependencies: r-rcolorbrewer@1.1-3 r-limma@3.66.0 r-gplots@3.2.0 r-ggplot2@4.0.1 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/roastgsa
Licenses: GPL 3
Build system: r
Synopsis: Rotation based gene set analysis
Description:

This package implements a variety of functions useful for gene set analysis using rotations to approximate the null distribution. It contributes with the implementation of seven test statistic scores that can be used with different goals and interpretations. Several functions are available to complement the statistical results with graphical representations.

r-rcellminerdata 2.32.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/rcellminerData
Licenses: FSDG-compatible
Build system: r
Synopsis: rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines
Description:

The NCI-60 cancer cell line panel has been used over the course of several decades as an anti-cancer drug screen. This panel was developed as part of the Developmental Therapeutics Program (DTP, http://dtp.nci.nih.gov/) of the U.S. National Cancer Institute (NCI). Thousands of compounds have been tested on the NCI-60, which have been extensively characterized by many platforms for gene and protein expression, copy number, mutation, and others (Reinhold, et al., 2012). The purpose of the CellMiner project (http://discover.nci.nih.gov/ cellminer) has been to integrate data from multiple platforms used to analyze the NCI-60 and to provide a powerful suite of tools for exploration of NCI-60 data.

r-rnasense 1.24.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-qvalue@2.42.0 r-nbpseq@0.3.1 r-ggplot2@4.0.1
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RNAsense
Licenses: GPL 3
Build system: r
Synopsis: Analysis of Time-Resolved RNA-Seq Data
Description:

RNA-sense tool compares RNA-seq time curves in two experimental conditions, i.e. wild-type and mutant, and works in three steps. At Step 1, it builds expression profile for each transcript in one condition (i.e. wild-type) and tests if the transcript abundance grows or decays significantly. Dynamic transcripts are then sorted to non-overlapping groups (time profiles) by the time point of switch up or down. At Step 2, RNA-sense outputs the groups of differentially expressed transcripts, which are up- or downregulated in the mutant compared to the wild-type at each time point. At Step 3, Correlations (Fisher's exact test) between the outputs of Step 1 (switch up- and switch down- time profile groups) and the outputs of Step2 (differentially expressed transcript groups) are calculated. The results of the correlation analysis are printed as two-dimensional color plot, with time profiles and differential expression groups at y- and x-axis, respectively, and facilitates the biological interpretation of the data.

r-rrho 1.50.0
Propagated dependencies: r-venndiagram@1.7.3
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RRHO
Licenses: GPL 2
Build system: r
Synopsis: Inference on agreement between ordered lists
Description:

The package is aimed at inference on the amount of agreement in two sorted lists using the Rank-Rank Hypergeometric Overlap test.

r-rpa 1.66.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://github.com/antagomir/RPA
Licenses: FreeBSD
Build system: r
Synopsis: RPA: Robust Probabilistic Averaging for probe-level analysis
Description:

Probabilistic analysis of probe reliability and differential gene expression on short oligonucleotide arrays.

r-rawrr 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://github.com/fgcz/rawrr/
Licenses: GPL 3
Build system: r
Synopsis: Direct Access to Orbitrap Data and Beyond
Description:

This package wraps the functionality of the Thermo Fisher Scientic RawFileReader .NET 8.0 assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.

r-rcwl 1.26.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/Rcwl
Licenses: GPL 2 FSDG-compatible
Build system: r
Synopsis: An R interface to the Common Workflow Language
Description:

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

r-ribor 1.22.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/ribor
Licenses: GPL 3
Build system: r
Synopsis: An R Interface for Ribo Files
Description:

The ribor package provides an R Interface for .ribo files. It provides functionality to read the .ribo file, which is of HDF5 format, and performs common analyses on its contents.

r-rnaseqsamplesize 2.20.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RnaSeqSampleSize
Licenses: GPL 2+
Build system: r
Synopsis: RnaSeqSampleSize
Description:

RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data. It controls FDR for multiple testing and utilizes the average read count and dispersion distributions from real data to estimate a more reliable sample size. It is also equipped with several unique features, including estimation for interested genes or pathway, power curve visualization, and parameter optimization.

r-ragene20sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-rn-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/ragene20sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster)
Description:

Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster) assembled using data from public repositories.

r-rattus-norvegicus 1.3.1
Propagated dependencies: r-txdb-rnorvegicus-ucsc-rn5-refgene@3.12.0 r-organismdbi@1.52.0 r-org-rn-eg-db@3.22.0 r-go-db@3.22.0 r-genomicfeatures@1.62.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/Rattus.norvegicus
Licenses: Artistic License 2.0
Build system: r
Synopsis: Annotation package for the Rattus.norvegicus object
Description:

This package contains the Rattus.norvegicus object to access data from several related annotation packages.

Total results: 2911