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This package provides functions aiming to facilitate the analysis of the structure of animal acoustic signals in R'. warbleR makes use of the basic sound analysis tools from the packages tuneR and seewave', and offers new tools for exploring and quantifying acoustic signal structure. The package allows to organize and manipulate multiple sound files, create spectrograms of complete recordings or individual signals in different formats, run several measures of acoustic structure, and characterize different structural levels in acoustic signals (Araya-Salas et al 2016 <doi:10.1111/2041-210X.12624>).
Supplies permutation-test alternatives to traditional hypothesis-test procedures such as two-sample tests for means, medians, and standard deviations; correlation tests; tests for homogeneity and independence; and more. Suitable for general audiences, including individual and group users, introductory statistics courses, and more advanced statistics courses that desire an introduction to permutation tests.
All functions and data sets required for the examples in the book Hyndman (2026) "That's Weird: Anomaly Detection Using R" <https://OTexts.com/weird/>. All packages needed to run the examples are also loaded.
Run mixed-effects models that include weights at every level. The WeMix package fits a weighted mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. Both linear and logit models are supported. Models may have up to three levels. Random effects are estimated using the PIRLS algorithm from lme4pureR (Walker and Bates (2013) <https://github.com/lme4/lme4pureR>).
Allows to generate on-demand or by batch, any R documentation file, whatever is kind, data, function, class or package. It populates documentation sections, either automatically or by considering your input. Input code could be standard R code or offensive programming code. Documentation content completeness depends on the type of code you use. With offensive programming code, expect generated documentation to be fully completed, from a format and content point of view. With some standard R code, you will have to activate post processing to fill-in any section that requires complements. Produced manual page validity is automatically tested against R documentation compliance rules. Documentation language proficiency, wording style, and phrasal adjustments remains your job.
Dynamic interaction refers to spatial-temporal associations in the movements of two (or more) animals. This package provides tools for calculating a suite of indices used for quantifying dynamic interaction with wildlife telemetry data. For more information on each of the methods employed see the references within. The package (as of version >= 0.3) also has new tools for automating contact analysis in large tracking datasets. The package (as of version 1.0) uses the move2 class of objects for working with tracking dataset.
This package provides an R interface to the Whapi API <https://whapi.cloud>, enabling sending and receiving WhatsApp messages directly from R'. Functions include sending text, images, documents, stickers, geographic locations, and interactive messages (buttons and lists). Also includes webhook parsing utilities and channel health checks.
This package implements the Welch-Satterthwaite approximation for differences of non-standardized t-distributed random variables in both univariate and multivariate settings. The package provides methods for computing effective degrees of freedom and scale parameters, as well as distribution functions for the approximated difference distribution. The methodology extends the classical Welch-Satterthwaite framework from variance combinations to t-distribution differences through careful moment matching. Methods build on the classical Welch-Satterthwaite approach described in Welch (1947) <doi:10.1093/biomet/34.1-2.28> and Satterthwaite (1946) <doi:10.2307/3002019>.
Builds a joint probabilistic forecast across series and horizons using adaptive copulas (Gaussian/t) with shrinkage-repaired correlations. At the low level it calls a probabilistic mixer per series and horizon, which backtests several simple predictors, predicts next-window Continuous Ranked Probability Score (CRPS), and converts those scores into softmax weights to form a calibrated mixture (r/q/p/dfun). The mixer blends eight simple predictors: a naive predictor that wraps the last move in a PERT distribution; an arima predictor using auto.arima for one-step forecasts; an Exponentially Weighted Moving Average (EWMA) gaussian predictor with mean/variance under a Gaussian; a historical bootstrap predictor that resamples past horizon-aligned moves; a drift residual bootstrap predictor combining linear trend with bootstrapped residuals; a volatility-scaled naive predictor centering on the last move and scaling by recent volatility; a robust median mad predictor using median/MAD with Laplace or Normal shape; and a shrunk quantile predictor that fits a few quantile regressions over time and interpolates to a full predictive. The function then couples the per-series mixtures on a common transform (additive/multiplicative/log-multiplicative), simulates coherent draws, and returns both transformed- and level-scale samplers and summaries.
Weighted descriptive statistics is the discipline of quantitatively describing the main features of real-valued fuzzy data which usually given from a fuzzy population. One can summarize this special kind of fuzzy data numerically or graphically using this package. To interpret some of the properties of one or several sets of real-valued fuzzy data, numerically summarize is possible by some weighted statistics which are designed in this package such as mean, variance, covariance and correlation coefficent. Also, graphically interpretation can be given by weighted histogram and weighted scatter plot using this package to describe properties of real-valued fuzzy data set.
This package provides a utility for working with women's basketball data. A scraping and aggregating interface for the WNBA Stats API <https://stats.wnba.com/> and ESPN's <https://www.espn.com> women's college basketball and WNBA statistics. It provides users with the capability to access the game play-by-plays, box scores, standings and results to analyze the data for themselves.
K-means clustering, hierarchical clustering, and PCA with observational weights and/or variable weights. It also includes the corresponding functions for data nuggets which serve as representative samples of large datasets. Cherasia et al., (2022) <doi:10.1007/978-3-031-22687-8_20>. Amaratunga et al., (2009) <doi:10.1002/9780470317129>.
This package provides a clean syntax for vectorising the use of Non-Standard Evaluation (NSE), for example in ggplot2', dplyr', or data.table'.
High-level tools to attach gridded weather data from the NASA POWER Project to event-based datasets. The package plans efficient spatio-temporal API calls via the nasapower R package, caches downloaded segments locally, and joins weather variables back to the input table using exact or rolling joins. This package is not affiliated with or endorsed by NASA.
Extract features and classify documents with noisy labels given by document-meta data or keyword matching Watanabe & Zhou (2020) <doi:10.1177/0894439320907027>.
Helper functions to easily add functionality to functions. The package can assign functions to have an lazy evaluation allowing you to save and update the arguments before and after each function call. You can set a temporary working directory within functions and wrap console messages around other functions.
Implementation of integrative weighting approaches for multiple observational studies and causal inferences. The package features three weighting approaches, each representing a special case of the unified weighting framework, introduced by Guha and Li (2024) <doi:10.1093/biomtc/ujae070>, which includes an extension of inverse probability weights for data integration settings.
This package provides functions for easily creating interactive web pages using R Markdown that students can use in self-guided learning.
The continuous wavelet transform enables the observation of transient/non-stationary cyclicity in time-series. The goal of cyclostratigraphic studies is to define frequency/period in the depth/time domain. By conducting the continuous wavelet transform on cyclostratigraphic data series one can observe and extract cyclic signals/signatures from signals. These results can then be visualized and interpreted enabling one to identify/interpret cyclicity in the geological record, which can be used to construct astrochronological age-models and identify and interpret cyclicity in past and present climate systems. The WaverideR R package builds upon existing literature and existing codebase. The list of articles which are relevant can be grouped in four subjects; cyclostratigraphic data analysis,example data sets,the (continuous) wavelet transform and astronomical solutions. References for the cyclostratigraphic data analysis articles are: Stephen Meyers (2019) <doi:10.1016/j.earscirev.2018.11.015>. Mingsong Li, Linda Hinnov, Lee Kump (2019) <doi:10.1016/j.cageo.2019.02.011> Stephen Meyers (2012)<doi:10.1029/2012PA002307> Mingsong Li, Lee R. Kump, Linda A. Hinnov, Michael E. Mann (2018) <doi:10.1016/j.epsl.2018.08.041>. Wouters, S., Crucifix, M., Sinnesael, M., Da Silva, A.C., Zeeden, C., Zivanovic, M., Boulvain, F., Devleeschouwer, X. (2022) <doi:10.1016/j.earscirev.2021.103894>. Wouters, S., Da Silva, A.-C., Boulvain, F., and Devleeschouwer, X. (2021) <doi:10.32614/RJ-2021-039>. Huang, Norden E., Zhaohua Wu, Steven R. Long, Kenneth C. Arnold, Xianyao Chen, and Karin Blank (2009) <doi:10.1142/S1793536909000096>. Cleveland, W. S. (1979)<doi:10.1080/01621459.1979.10481038> Hurvich, C.M., Simonoff, J.S., and Tsai, C.L. (1998) <doi:10.1111/1467-9868.00125>, Golub, G., Heath, M. and Wahba, G. (1979) <doi:10.2307/1268518>. References for the example data articles are: Damien Pas, Linda Hinnov, James E. (Jed) Day, Kenneth Kodama, Matthias Sinnesael, Wei Liu (2018) <doi:10.1016/j.epsl.2018.02.010>. Steinhilber, Friedhelm, Abreu, Jacksiel, Beer, Juerg , Brunner, Irene, Christl, Marcus, Fischer, Hubertus, HeikkilA, U., Kubik, Peter, Mann, Mathias, Mccracken, K. , Miller, Heinrich, Miyahara, Hiroko, Oerter, Hans , Wilhelms, Frank. (2012 <doi:10.1073/pnas.1118965109>. Christian Zeeden, Frederik Hilgen, Thomas Westerhold, Lucas Lourens, Ursula Röhl, Torsten Bickert (2013) <doi:10.1016/j.palaeo.2012.11.009>. References for the (continuous) wavelet transform articles are: Morlet, Jean, Georges Arens, Eliane Fourgeau, and Dominique Glard (1982a) <doi:10.1190/1.1441328>. J. Morlet, G. Arens, E. Fourgeau, D. Giard (1982b) <doi:10.1190/1.1441329>. Torrence, C., and G. P. Compo (1998)<https://paos.colorado.edu/research/wavelets/bams_79_01_0061.pdf>, Gouhier TC, Grinsted A, Simko V (2021) <https://github.com/tgouhier/biwavelet>. Angi Roesch and Harald Schmidbauer (2018) <https://CRAN.R-project.org/package=WaveletComp>. Russell, Brian, and Jiajun Han (2016)<https://www.crewes.org/Documents/ResearchReports/2016/CRR201668.pdf>. Gabor, Dennis (1946) <http://genesis.eecg.toronto.edu/gabor1946.pdf>. J. Laskar, P. Robutel, F. Joutel, M. Gastineau, A.C.M. Correia, and B. Levrard, B. (2004) <doi:10.1051/0004-6361:20041335>. Laskar, J., Fienga, A., Gastineau, M., Manche, H. (2011a) <doi:10.1051/0004-6361/201116836>. References for the astronomical solutions articles are: Laskar, J., Gastineau, M., Delisle, J.-B., Farres, A., Fienga, A. (2011b <doi:10.1051/0004-6361/201117504>. J. Laskar (2019) <doi:10.1016/B978-0-12-824360-2.00004-8>. Zeebe, Richard E (2017) <doi:10.3847/1538-3881/aa8cce>. Zeebe, R. E. and Lourens, L. J. (2019) <doi:10.1016/j.epsl.2022.117595>. Richard E. Zeebe Lucas J. Lourens (2022) <doi:10.1126/science.aax0612>.
This package provides two functions frameableWidget()', and frameWidget()'. The frameableWidget() is used to add extra code to a htmlwidget which allows is to be rendered correctly inside a responsive iframe'. The frameWidget() is a htmlwidget which displays content of another htmlwidget inside a responsive iframe'. These functions allow for easier embedding of htmlwidgets in content management systems such as wordpress', blogger etc. They also allow for separation of widget content from main HTML content where CSS of the main HTML could interfere with the widget.
This package provides functions to convert between weather metrics, including conversions for metrics of temperature, air moisture, wind speed, and precipitation. This package also includes functions to calculate the heat index from air temperature and air moisture.
Simulates the results of completed randomized controlled trials, as if they had been conducted as adaptive Multi-Arm Bandit (MAB) trials instead. Augmented inverse probability weighted estimation (AIPW), outlined by Hadad et al. (2021) <doi:10.1073/pnas.2014602118>, is used to robustly estimate the probability of success for each treatment arm under the adaptive design. Provides customization options to simulate perfect/imperfect information, stationary/non-stationary bandits, blocked treatment assignments, along with control augmentation, and other hybrid strategies for assigning treatment arms. The methods used in simulation were inspired by Offer-Westort et al. (2021) <doi:10.1111/ajps.12597>.
In Multidimensional Systems the When dimension allows us to express when the analysed facts have occurred. The purpose of this package is to provide support for implementing this dimension in the form of date and time tables for Relational On-Line Analytical Processing star database systems.
This package provides a toolbox of common robust statistical tests, including robust descriptives, robust t-tests, and robust ANOVA. It is also available as a module for jamovi (see <https://www.jamovi.org> for more information). Walrus is based on the WRS2 package by Patrick Mair, which is in turn based on the scripts and work of Rand Wilcox. These analyses are described in depth in the book Introduction to Robust Estimation & Hypothesis Testing'.