ScalFMM is a C++ library that implements a kernel-independent Fast Multipole Method.

Mini-chameleon is an educational purpose dense linear algebra solver. As provided, it essentially provides drivers while the actual computational routines remain to be completed. The goal is to implement a dense matrix-matrix product and an LU factorization, first targeting a sequential implementation, followed by an simd version, a shared-memory openmp one, a distributed memory MPI one, an MPI+openmp one and a runtime-based starpu one.

Chameleon is a dense linear algebra solver relying on sequential task-based algorithms where sub-tasks of the overall algorithms are submitted to a run-time system. Such a system is a layer between the application and the hardware which handles the scheduling and the effective execution of tasks on the processing units. A run-time system such as StarPU is able to manage automatically data transfers between not shared memory area (CPUs-GPUs, distributed nodes).

Chameleon is a dense linear algebra solver relying on sequential task-based algorithms where sub-tasks of the overall algorithms are submitted to a run-time system. Such a system is a layer between the application and the hardware which handles the scheduling and the effective execution of tasks on the processing units. A run-time system such as StarPU is able to manage automatically data transfers between not shared memory area (CPUs-GPUs, distributed nodes).

ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.

PaStiX (Parallel Sparse matriX package) is a scientific library that provides a high performance parallel solver for very large sparse linear systems based on direct methods. Numerical algorithms are implemented in single or double precision (real or complex) using LLt, LDLt and LU with static pivoting (for non symmetric matrices having a symmetric pattern). This solver also provides some low-rank compression methods to reduce the memory footprint and/or the time-to-solution.

Chameleon is a dense linear algebra solver relying on sequential task-based algorithms where sub-tasks of the overall algorithms are submitted to a run-time system. Such a system is a layer between the application and the hardware which handles the scheduling and the effective execution of tasks on the processing units. A run-time system such as StarPU is able to manage automatically data transfers between not shared memory area (CPUs-GPUs, distributed nodes).

This package provides a complete GCC tool chain for Fortran development to be installed in user profiles. This includes gfortran, as well as libc (headers and binaries, plus debugging symbols in the debug output), and binutils.

GCC is the GNU Compiler Collection. It provides compiler front-ends for several languages, including C, C++, Objective-C, Fortran, Ada, and Go. It also includes runtime support libraries for these languages.

This package provides a complete GCC tool chain for Fortran development to be installed in user profiles. This includes gfortran, as well as libc (headers and binaries, plus debugging symbols in the debug output), and binutils.

ViTE is a trace explorer. It is a tool to visualize execution traces of parallel programs (OpenMP, MPI, etc.) in Pajé or OTF format for debugging and profiling parallel or distributed applications. Such traces can be obtained using, for example, EZTrace.

GUIX package for the SZ compressor.

zfp is a compressed number format for multi-dimensional arrays. zfp provides compressed-array classes (e.g., for in-memory storage) and high-speed, parallel data compression (e.g., for offline storage). zfp supports both lossy and lossless compression and fine-grained user control over accuracy and storage size.

SIONlib is a library for writing and reading data from several thousands of parallel tasks into/from one or a small number of physical files.

Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output.

FTI stands for Fault Tolerance Interface and is a library that aims to give computational scientists the means to perform fast and efficient multilevel checkpointing in large scale supercomputers.

docopt helps you: - define the interface for your command-line app, and - automatically generate a parser for it. docopt is based on conventions that have been used for decades in help messages and man pages for describing a program's interface. An interface description in docopt is such a help message, but formalized.

GUIX package for the SZ3 compressor.

Redox is a C++ interface to the Redis key-value store that makes it easy to write applications that are both elegant and high-performance. Communication should be a means to an end, not something we spend a lot of time worrying about. Redox takes care of the details so you can move on to the interesting part of your project.

This package has been developed for computing exact distances, without heuristics, between all pairs of reads of a NGS sample. This is a first step for supervised or unsupervised clustering of reads in an environmental sample.

ElementaryX: Elementary Emacs configuration coupled with Guix Minimal org-mode latex beamer (ox-beamer) setup.

ElementaryX: Elementary Emacs configuration coupled with Guix Full setup.

ElementaryX suite: Elementary Emacs configuration coupled with Guix. Setup for the suite composed of Emacs, Vym, ESCode versions. This is a meta-package.

ElementaryX: Elementary Emacs configuration coupled with Guix. Setup for languages with parentheses or alike: lisp, scheme.