_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


bazel 6.5.0
Dependencies: openjdk@11.0.22 grpc@1.52.2 python@3.11.14 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-io@2.5 java-commons-lang@2.6 java-hamcrest-core@1.3 java-jsr305@3.0.1 java-xz@1.9 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bazel.scm (guix-science packages bazel)
Home page: https://bazel.build
Licenses: ASL 2.0
Build system: gnu
Synopsis: Build and test tool
Description:

Bazel is a build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bazel 6.4.0
Dependencies: openjdk@11.0.22 grpc@1.52.2 python@3.11.14 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-io@2.5 java-commons-lang@2.6 java-hamcrest-core@1.3 java-jsr305@3.0.1 java-xz@1.9 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bazel.scm (guix-science packages bazel)
Home page: https://bazel.build
Licenses: ASL 2.0
Build system: gnu
Synopsis: Build and test tool
Description:

Bazel is a build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bazel 6.3.2
Dependencies: openjdk@11.0.22 grpc@1.52.2 python@3.11.14 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-io@2.5 java-commons-lang@2.6 java-hamcrest-core@1.3 java-jsr305@3.0.1 java-xz@1.9 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bazel.scm (guix-science packages bazel)
Home page: https://bazel.build
Licenses: ASL 2.0
Build system: gnu
Synopsis: Build and test tool
Description:

Bazel is a build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bazel 6.1.0
Dependencies: openjdk@11.0.22 grpc@1.52.2 python@3.11.14 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-io@2.5 java-commons-lang@2.6 java-hamcrest-core@1.3 java-jsr305@3.0.1 java-xz@1.9 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bazel.scm (guix-science packages bazel)
Home page: https://bazel.build
Licenses: ASL 2.0
Build system: gnu
Synopsis: Build and test tool
Description:

Bazel is a build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

mpigraph 1-1.5f6cbd9
Dependencies: perl@5.36.0
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://github.com/LLNL/mpiGraph
Licenses: FSF-free
Build system: gnu
Synopsis: Benchmark to generate network bandwidth images
Description:

mpiGraph is a MPI benchmark to generate network bandwidth images.

gpcnet 1.3
Dependencies: openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://github.com/netbench/GPCNET
Licenses: ASL 2.0
Build system: gnu
Synopsis: Global Performance and Congestion Network Test
Description:

GPCNeT is a benchmark suite that includes simulated network congestion, allowing the benchmarking of network performance in closer-to-real-conditions in HPC networks.

netlib-hpl 2.3
Dependencies: openblas@0.3.30 openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://netlib.org/benchmark/hpl/
Licenses: non-copyleft
Build system: gnu
Synopsis: High-Performance Linpack Benchmark for Distributed-Memory Computers
Description:

HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.

npb-openmpi 3.4.3
Dependencies: openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://www.nas.nasa.gov/software/npb.html
Licenses: Expat
Build system: gnu
Synopsis: NAS Parallel Benchmarks (NPB), MPI variant
Description:

The benchmarks are derived from computational fluid dynamics (CFD) applications and consist of five kernels and three pseudo-applications in the original "pencil-and-paper" specification (NPB 1). The benchmark suite has been extended to include new benchmarks for unstructured adaptive meshes, parallel I/O, multi-zone applications, and computational grids. Problem sizes in NPB are predefined and indicated as different classes.

npb-openmp 3.4.3
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://www.nas.nasa.gov/software/npb.html
Licenses: Expat
Build system: gnu
Synopsis: NAS Parallel Benchmarks (NPB), OpenMP variant
Description:

The benchmarks are derived from computational fluid dynamics (CFD) applications and consist of five kernels and three pseudo-applications in the original "pencil-and-paper" specification (NPB 1). The benchmark suite has been extended to include new benchmarks for unstructured adaptive meshes, parallel I/O, multi-zone applications, and computational grids. Problem sizes in NPB are predefined and indicated as different classes.

r-rbioformats 1.6.0
Dependencies: openjdk@11.0.22
Propagated dependencies: r-ebimage@4.52.0 r-rjava@1.0-11 r-s4vectors@0.48.0
Channel: guix-science
Location: guix-science/packages/bioconductor.scm (guix-science packages bioconductor)
Home page: https://github.com/aoles/RBioFormats
Licenses: GPL 3
Build system: r
Synopsis: R interface to Bio-Formats
Description:

This is an R package which interfaces with the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.

r-isee 2.14.0
Propagated dependencies: r-biocgenerics@0.56.0 r-circlize@0.4.16 r-colourpicker@1.3.0 r-complexheatmap@2.26.0 r-dt@0.34.0 r-ggplot2@4.0.1 r-ggrepel@0.9.6 r-igraph@2.2.1 r-mgcv@1.9-4 r-rintrojs@0.3.4 r-s4vectors@0.48.0 r-shiny@1.11.1 r-shinyace@0.4.4 r-shinydashboard@0.7.3 r-shinyjs@2.1.0 r-shinywidgets@0.8.6 r-singlecellexperiment@1.32.0 r-summarizedexperiment@1.40.0 r-vipor@0.4.7 r-viridislite@0.4.2
Channel: guix-science
Location: guix-science/packages/bioconductor.scm (guix-science packages bioconductor)
Home page: https://github.com/iSEE/iSEE
Licenses: Expat
Build system: r
Synopsis: Interactive SummarizedExperiment explorer
Description:

Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

score-client 5.0.0
Dependencies: openjdk@11.0.22
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://docs.icgc.org/software/download/#score-client
Licenses: GPL 3
Build system: gnu
Synopsis: Tool to view ICGC data
Description:

This package provides a tool to download or view data in the cloud environments of ICGC.

hiddendomains 3.1
Dependencies: perl@5.36.0
Propagated dependencies: r-depmixs4@1.5-1 r-hiddenmarkov@1.8-14
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: http://hiddendomains.sourceforge.net
Licenses: GPL 2
Build system: gnu
Synopsis: Programs used to identify enrichment of ChIP-seq reads
Description:

hiddenDomains is a suite of programs used to identify significant enrichment of ChIP-seq reads that span large domains, like HK27me3. The input data can be in BAM format, or in a tab-delimited 'reads per bin' format described below. The output is a BED formatted file the lists the enriched domains and their posterior probabilities.

spades 4.2.0
Dependencies: bzip2@1.0.8 perl@5.36.0 python@3.11.14 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: http://ablab.github.io/spades/
Licenses: GPL 2
Build system: cmake
Synopsis: Genome assembly toolkit
Description:

SPAdes is an assembly toolkit containing various assembly pipelines.

pcap-core 3.5.0
Propagated dependencies: bwa@0.7.18 samtools@1.19 biobambam@0.0.191
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/ICGC-TCGA-PanCancer/PCAP-core
Licenses: GPL 2+
Build system: gnu
Synopsis: NGS reference implementations and helper code for the ICGC/TCGA Pan-Cancer Analysis Project
Description:
mmseqs2 18
Dependencies: bzip2@1.0.8 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://mmseqs.com/
Licenses: Expat
Build system: cmake
Synopsis: Ultra fast and sensitive search and clustering suite
Description:

MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets.

perl-sys-sigaction 0.23
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: http://search.cpan.org/dist/Sys-SigAction
Licenses: GPL 1+
Build system: perl
Synopsis: Perl extension for Consistent Signal Handling
Description:
codemin 1.0.5
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/Illumina/strelka/tree/master/redist
Licenses: Expat
Build system: gnu
Synopsis: Set of lightweight minimization functions.
Description:

The CodeMin minimization library provides a set of lightweight minimization functions originally developed for the CodeAxe phylogenetic analysis package.

python-nanomath 1.0.1
Propagated dependencies: python-deprecated@1.2.14 python-numpy@1.26.4 python-pandas@2.2.3
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/wdecoster/nanomath
Licenses: GPL 3
Build system: pyproject
Synopsis: Simple math function for other Oxford Nanopore scripts
Description:

This package contains a few simple math function for other Oxford Nanopore processing scripts.

rsat 2022-06-26
Dependencies: perl@5.36.0 python@3.11.14 python-pyyaml@6.0.2
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://rsat.france-bioinformatique.fr/teaching/RSAT_portal.html
Licenses: AGPL 3+
Build system: gnu
Synopsis: Regulatory sequence analysis tools
Description:

This package provides a subset of the Regulatory Sequence Analysis Tools (RSAT).

allelecount 4.2.1
Dependencies: zlib@1.3.1 htslib@1.21 perl-pod-coverage@0.23 perl-file-which@1.23 perl-test-fatal@0.016 perl-try-tiny@0.31 samtools@1.19
Propagated dependencies: perl-const-fast@0.014 perl-sub-exporter-progressive@0.001013 perl-bio-db-hts@3.01 bioperl-minimal@1.7.0
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/cancerit/alleleCount
Licenses: AGPL 3+
Build system: gnu
Synopsis: Support code for NGS copy number algorithms
Description:

This package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenburg.

perl-ppi-html 1.08
Dependencies: perl-css-tiny@1.20 perl-params-util@1.102 perl-ppi@1.277
Propagated dependencies: perl-module-install@1.19
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: http://search.cpan.org/dist/PPI-HTML
Licenses: GPL 1+
Build system: perl
Synopsis: Generate syntax-hightlighted HTML for Perl using PPI
Description:
python-primer3-py 2.2.0
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://libnano.github.io/primer3-py/
Licenses: GPL 2
Build system: pyproject
Synopsis: Simple oligo analysis and primer design
Description:

Primer3-py is a Python-abstracted API for the popular Primer3 library. The intention is to provide a simple and reliable interface for automated oligo analysis and design.

Primer3-py also includes bindings for the Primer3 primer design engine if you’d prefer to use an established pipeline. The IO parameters mirror those of the original Primer3, but you don’t have to deal with messy and slow file IO for your automated workflows.

primer3 2.6.1
Dependencies: perl@5.36.0
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://primer3.org/
Licenses: GPL 2
Build system: gnu
Synopsis: Tool to select primers for polymerase chain reaction
Description:

Primer3 is a widely used program for designing PCR primers. PCR is an essential and ubiquitous tool in genetics and molecular biology. Primer3 can also design hybridization probes and sequencing primers.

Page: 12324
Total packages: 563