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MetaPhlAn relies on ~5.1M unique clade-specific marker genes (the latest marker information file can be found here) identified from ~1M microbial genomes (~236,600 references and 771,500 metagenomic assembled genomes) spanning 26,970 species-level genome bins (SGBs), 4,992 of them taxonomically unidentified at the species level, allowing:
- unambiguous taxonomic assignments; - an accurate estimation of organismal relative abundance; - SGB-level resolution for bacteria, archaea and eukaryotes; - strain identification and tracking - orders of magnitude speedups compared to existing methods. - metagenomic strain-level population genomics
HUMAnN is a method for efficiently and accurately profiling the abundance of microbial metabolic pathways and other molecular functions from metagenomic or metatranscriptomic sequencing data.
GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the StrainPhlAn module, it is possible to perform accurate strain-level microbial profiling.
HUMAnN is a method for efficiently and accurately profiling the abundance of microbial metabolic pathways and other molecular functions from metagenomic or metatranscriptomic sequencing data.
An golang log lib, supports tracing and level, wrap by standard log lib
Package chromedp is a high level Chrome DevTools Protocol client that simplifies driving browsers for scraping, unit testing, or profiling web pages using the CDP.
mango is a man-page generator for the Go flag, pflag, cobra, coral, and kong packages. It extracts commands, flags, and arguments from your program and enables it to self-document.
Package profile provides a simple way to manage runtime/pprof profiling of your Go application.
Package httphead contains utils for parsing HTTP and HTTP-grammar compatible text protocols headers.
Readline is a pure go implementation for GNU-Readline kind library.
Package demangle defines functions that demangle GCC/LLVM C++ and Rust symbol names. This package recognizes names that were mangled according to the C++ ABI defined at @urlhttp://codesourcery.com/cxx-abi/,http://codesourcery.com/cxx-abi/ and the Rust ABI defined at @urlhttps://rust-lang.github.io/rfcs/2603-rust-symbol-name-mangling-v0.html,https://rust-lang.github.io/rfcs/2603-rust-symbol-name-mangling-v0.html
Disk Usage/Free Utility. Features include; User-friendly, colorful output; Adjusts to your terminal's theme & width; Sort the results according to your needs; Groups & filters devices; Can conveniently output JSON.
pprof is a tool for collection, manipulation and visualization of performance profiles.
Package cdproto provides the Chrome DevTools Protocol commands, types, and events for the cdproto domain.
roff lets you write roff documents in Go
This part of Minio project is a very cool, fast and light wildcard pattern matching.
fgprof is a sampling Go profiler that allows you to analyze On-CPU as well as [Off-CPU](@urlhttp://www.brendangregg.com/offcpuanalysis.html,http://www.brendangregg.com/offcpuanalysis.html) (e.g. I/O) time together.
Package pool contains helpers for pooling structures distinguishable by size.
Package pdf implements reading of PDF files.
OSC52 is a terminal escape sequence that allows copying text to the clipboard.
@codetermenv lets you safely use advanced styling options on the terminal. It gathers information about the terminal environment in terms of its ANSI & color support and offers you convenient methods to colorize and style your output, without you having to deal with all kinds of weird ANSI escape sequences and color conversions.
Package sysutil provides some utilities for working with cross platform systems.