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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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r-sp 2.1-4
Propagated dependencies: r-lattice@0.22-6
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/sp
Licenses: GPL 2+
Synopsis: Classes and methods for spatial data
Description:

This package provides classes and methods for spatial data; the classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc.

r-spp 1.16.0
Dependencies: zlib@1.3
Propagated dependencies: r-bh@1.84.0-0 r-catools@1.18.3 r-rcpp@1.0.13-1 r-rsamtools@2.22.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://cran.r-project.org/web/packages/spp/
Licenses: GPL 2
Synopsis: ChIP-Seq processing pipeline
Description:

This package provides tools for analysis of ChIP-seq and other functional sequencing data.

r-spd 2.0-1
Propagated dependencies: r-kernsmooth@2.23-24
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://www.unstarched.net
Licenses: GPL 2+ GPL 3+
Synopsis: Semi Parametric Distribution
Description:

The Semi Parametric Piecewise Distribution blends the Generalized Pareto Distribution for the tails with a kernel based interior.

r-spb 1.0
Propagated dependencies: r-knitr@1.49 r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SPB
Licenses: GPL 3+
Synopsis: Simple Progress Bars for Procedural Coding
Description:

This package provides a simple progress bar to use for basic and advanced users that suits all those who prefer procedural programming. It is especially useful for integration into markdown files thanks to the progress bar's customisable appearance.

r-spc 0.7.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://www.r-project.org
Licenses: GPL 2+
Synopsis: Statistical Process Control -- Calculation of ARL and Other Control Chart Performance Measures
Description:

Evaluation of control charts by means of the zero-state, steady-state ARL (Average Run Length) and RL quantiles. Setting up control charts for given in-control ARL. The control charts under consideration are one- and two-sided EWMA, CUSUM, and Shiryaev-Roberts schemes for monitoring the mean or variance of normally distributed independent data. ARL calculation of the same set of schemes under drift (in the mean) are added. Eventually, all ARL measures for the multivariate EWMA (MEWMA) are provided.

r-sps 0.6.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://marberts.github.io/sps/
Licenses: Expat
Synopsis: Sequential Poisson Sampling
Description:

Sequential Poisson sampling is a variation of Poisson sampling for drawing probability-proportional-to-size samples with a given number of units, and is commonly used for price-index surveys. This package gives functions to draw stratified sequential Poisson samples according to the method by Ohlsson (1998, ISSN:0282-423X), as well as other order sample designs by Rosén (1997, <doi:10.1016/S0378-3758(96)00186-3>), and generate appropriate bootstrap replicate weights according to the generalized bootstrap method by Beaumont and Patak (2012, <doi:10.1111/j.1751-5823.2011.00166.x>).

r-spm 1.2.2
Propagated dependencies: r-sp@2.1-4 r-ranger@0.17.0 r-randomforest@4.7-1.2 r-psy@1.2 r-gstat@2.1-2 r-gbm@2.2.2 r-biomod2@4.2-6-2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spm
Licenses: GPL 2+
Synopsis: Spatial Predictive Modeling
Description:

Introduction to some novel accurate hybrid methods of geostatistical and machine learning methods for spatial predictive modelling. It contains two commonly used geostatistical methods, two machine learning methods, four hybrid methods and two averaging methods. For each method, two functions are provided. One function is for assessing the predictive errors and accuracy of the method based on cross-validation. The other one is for generating spatial predictions using the method. For details please see: Li, J., Potter, A., Huang, Z., Daniell, J. J. and Heap, A. (2010) <https:www.ga.gov.au/metadata-gateway/metadata/record/gcat_71407> Li, J., Heap, A. D., Potter, A., Huang, Z. and Daniell, J. (2011) <doi:10.1016/j.csr.2011.05.015> Li, J., Heap, A. D., Potter, A. and Daniell, J. (2011) <doi:10.1016/j.envsoft.2011.07.004> Li, J., Potter, A., Huang, Z. and Heap, A. (2012) <https:www.ga.gov.au/metadata-gateway/metadata/record/74030>.

r-spaa 0.2.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/helixcn/spaa
Licenses: GPL 2
Synopsis: SPecies Association Analysis
Description:

Miscellaneous functions for analysing species association and niche overlap.

r-splm 1.6-5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=splm
Licenses: GPL 2
Synopsis: Econometric Models for Spatial Panel Data
Description:

ML and GM estimation and diagnostic testing of econometric models for spatial panel data.

r-spem 1.46.0
Propagated dependencies: r-rsolnp@1.16 r-biobase@2.66.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://bioconductor.org/packages/SPEM
Licenses: GPL 2
Synopsis: S-system parameter estimation method
Description:

This package can optimize the parameter in S-system models given time series data.

r-spcr 2.1.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://doi.org/10.1016/j.csda.2015.03.016
Licenses: GPL 2+
Synopsis: Sparse Principal Component Regression
Description:

The sparse principal component regression is computed. The regularization parameters are optimized by cross-validation.

r-spfw 0.1.0
Propagated dependencies: r-rcpparmadillo@14.0.2-1 r-rcpp@1.0.13-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spFW
Licenses: GPL 3
Synopsis: Hierarchical Spatial Finlay-Wilkinson Model
Description:

Estimation and Prediction Functions Using Bayesian Hierarchical Spatial Finlay-Wilkinson Model for Analysis of Multi-Environment Field Trials.

r-spei 1.8.1
Propagated dependencies: r-zoo@1.8-12 r-tlmoments@0.7.5.3 r-reshape@0.8.9 r-lubridate@1.9.3 r-lmomco@2.5.1 r-lmom@3.2 r-ggplot2@3.5.1 r-checkmate@2.3.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://spei.csic.es
Licenses: GPL 2
Synopsis: Calculation of the Standardized Precipitation-Evapotranspiration Index
Description:

This package provides a set of functions for computing potential evapotranspiration and several widely used drought indices including the Standardized Precipitation-Evapotranspiration Index (SPEI).

r-spls 2.2-3
Propagated dependencies: r-pls@2.8-5 r-nnet@7.3-19 r-mass@7.3-61
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spls
Licenses: GPL 2+
Synopsis: Sparse Partial Least Squares (SPLS) Regression and Classification
Description:

This package provides functions for fitting a sparse partial least squares (SPLS) regression and classification (Chun and Keles (2010) <doi:10.1111/j.1467-9868.2009.00723.x>).

r-spsl 0.1-9
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SPSL
Licenses: GPL 3
Synopsis: Site Percolation on Square Lattices (SPSL)
Description:

This package provides basic functionality for labeling iso- & anisotropic percolation clusters on 2D & 3D square lattices with various lattice sizes, occupation probabilities, von Neumann & Moore (1,d)-neighborhoods, and random variables weighting the percolation lattice sites.

r-spqn 1.18.0
Propagated dependencies: r-summarizedexperiment@1.36.0 r-matrixstats@1.4.1 r-ggridges@0.5.6 r-ggplot2@3.5.1 r-biocgenerics@0.52.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://github.com/hansenlab/spqn
Licenses: Artistic License 2.0
Synopsis: Spatial quantile normalization
Description:

The spqn package implements spatial quantile normalization (SpQN). This method was developed to remove a mean-correlation relationship in correlation matrices built from gene expression data. It can serve as pre-processing step prior to a co-expression analysis.

r-spia 2.58.0
Propagated dependencies: r-kegggraph@1.66.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: http://bioinformatics.oxfordjournals.org/cgi/reprint/btn577v1
Licenses: FSDG-compatible
Synopsis: Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Description:

This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study.

r-spia 2.54.0
Propagated dependencies: r-kegggraph@1.66.0
Channel: guix-science-nonfree
Location: guix-science-nonfree/packages/bioconductor.scm (guix-science-nonfree packages bioconductor)
Home page: http://bioinformatics.oxfordjournals.org/cgi/reprint/btn577v1
Licenses: Nonfree
Synopsis: Signaling Pathway Impact Analysis
Description:

This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study.

r-spef 1.0.9
Propagated dependencies: r-survival@3.7-0 r-squarem@2021.1 r-sm@2.2-6.0 r-plyr@1.8.9 r-nleqslv@3.3.5 r-ggplot2@3.5.1 r-bb@2019.10-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://github.com/stc04003/spef
Licenses: GPL 3+
Synopsis: Semiparametric Estimating Functions
Description:

This package provides functions for fitting semiparametric regression models for panel count survival data. An overview of the package can be found in Wang and Yan (2011) <doi:10.1016/j.cmpb.2010.10.005> and Chiou et al. (2018) <doi:10.1111/insr.12271>.

r-sped 0.3
Propagated dependencies: r-pooh@0.3-2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sped
Licenses: GPL 2+
Synopsis: Multi-Gene Descent Probabilities
Description:

Do multi-gene descent probabilities (Thompson, 1983, <doi:10.1098/rspb.1983.0072>) and special cases thereof (Thompson, 1986, <doi:10.1002/zoo.1430050210>) including inbreeding and kinship coefficients. But does much more: probabilities of any set of genes descending from any other set of genes.

r-spec 0.1.9
Propagated dependencies: r-magrittr@2.0.3 r-encode@0.3.6 r-csv@0.6.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spec
Licenses: GPL 3
Synopsis: Data Specification Format and Interface
Description:

This package creates a data specification that describes the columns of a table (data.frame). Provides methods to read, write, and update the specification. Checks whether a table matches its specification. See specification.data.frame(),read.spec(), write.spec(), as.csv.spec(), respecify.character(), and %matches%.data.frame().

r-spex 0.7.1
Propagated dependencies: r-sp@2.1-4 r-reproj@0.7.0 r-raster@3.6-30 r-quadmesh@0.5.5 r-crsmeta@0.3.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://mdsumner.github.io/spex/
Licenses: GPL 3
Synopsis: Spatial Extent Tools
Description:

This package provides functions to produce a fully fledged geo-spatial object extent as a SpatialPolygonsDataFrame'. Also included are functions to generate polygons from raster data using quadmesh techniques, a round number buffered extent, and general spatial-extent and raster-like extent helpers missing from the originating packages. Some latitude-based tools for polar maps are included.

r-spam 2.11-0
Propagated dependencies: r-dotcall64@1.2 r-rcpp@1.0.13-1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://www.math.uzh.ch/pages/spam/
Licenses: Modified BSD LGPL 2.0
Synopsis: Sparse matrix algebra
Description:

This package provides a set of functions for sparse matrix algebra. Differences with other sparse matrix packages are:

  1. it only supports (essentially) one sparse matrix format;

  2. it is based on transparent and simple structure(s);

  3. it is tailored for MCMC calculations within G(M)RF;

  4. and it is fast and scalable (with the extension package spam64).

r-spdl 0.0.5
Propagated dependencies: r-rcppspdlog@0.0.19
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/eddelbuettel/spdl
Licenses: GPL 2+
Synopsis: Easier use of RcppSpdlog functions via wrapper
Description:

Logging functions in RcppSpdlog provide access to the logging functionality from the spdlog C++ library. This package offers shorter convenience wrappers for the R functions which match the C++ functions, namely via, say, spdl::debug() at the debug level. The actual formatting is done by the fmt::format() function from the fmtlib library (that is also std::format() in C++20 or later).

Total results: 415