Calculates grey level co-occurrence matrix (GLCM) based texture measures (Hall-Beyer (2017) <https://prism.ucalgary.ca/bitstream/handle/1880/51900/texture%20tutorial%20v%203_0%20180206.pdf>; Haralick et al. (1973) <doi:10.1109/TSMC.1973.4309314>) of raster layers using a sliding rectangular window. It also includes functions to quantize a raster into grey levels as well as tabulate a glcm and calculate glcm texture metrics for a matrix.

Ke, B. S., Chiang, A. J., & Chang, Y. C. I. (2018) <doi:10.1080/10543406.2017.1377728> provide two theoretical methods (influence function and local influence) based on the area under the receiver operating characteristic curve (AUC) to quantify the numerical impact of each observation to the overall AUC. Alternative graphical tools, cumulative lift charts, are proposed to reveal the existences and approximate locations of those influential observations through data visualization.

This package provides a shiny app to visualize the knowledge networks for the code concepts. Using co-occurrence matrices of EHR codes from Veterans Affairs (VA) and Massachusetts General Brigham (MGB), the knowledge extraction via sparse embedding regression (KESER) algorithm was used to construct knowledge networks for the code concepts. Background and details about the method can be found at Chuan et al. (2021) <doi:10.1038/s41746-021-00519-z>.

This package provides GIS and map utilities, plus additional modeling tools for developing cellular automata, dynamic raster models, and agent based models in SpaDES'. Included are various methods for spatial spreading, spatial agents, GIS operations, random map generation, and others. See ?SpaDES.tools for an categorized overview of these additional tools. The suggested package NLMR can be installed from the following repository: (<https://PredictiveEcology.r-universe.dev>).

The German national forest inventory uses angle count sampling, a sampling method first published as `Bitterlich, W.: Die Winkelzählmessung. Allgemeine Forst- und Holzwirtschaftliche Zeitung, 58. Jahrg., Folge 11/12 vom Juni 1947` and extended by Grosenbaugh (<https://academic.oup.com/jof/article-abstract/50/1/32/4684174>) as probability proportional to size sampling. When plots are located near stand boundaries, their sizes and hence their probabilities need to be corrected.

This package implements likelihood inference for early epidemic analysis. BETS is short for the four key epidemiological events being modeled: Begin of exposure, End of exposure, time of Transmission, and time of Symptom onset. The package contains a dataset of the trajectory of confirmed cases during the coronavirus disease (COVID-19) early outbreak. More detail of the statistical methods can be found in Zhao et al. (2020) <arXiv:2004.07743>.

Built upon popular R packages such as ggstatsplot and ARTool', this collection offers a wide array of tools for simplifying reproducible analyses, generating high-quality visualizations, and producing APA'-compliant outputs. The primary goal of this package is to significantly reduce repetitive coding efforts, allowing you to focus on interpreting results. Whether you're dealing with ANOVA assumptions, reporting effect sizes, or creating publication-ready visualizations, this package makes these tasks easier.

Read, analyze, modify, and write GAMS (General Algebraic Modeling System) data. The main focus of gamstransfer is the highly efficient transfer of data with GAMS <https://www.gams.com/>, while keeping these operations as simple as possible for the user. The transfer of data usually takes place via an intermediate GDX (GAMS Data Exchange) file. Additionally, gamstransfer provides utility functions to get an overview of GAMS data and to check its validity.

Relatively easy access is provided to Maddison project data, which collates all the credible data on population and GDP for 169 countries, with some dating back to the year 1. MaddisonLeaders makes it easy to find the leaders for each year, allowing users to delete countries like OPEC with narrow economies to focus on the technology leaders. ggplotPath makes it easy to plot data for only selected countries or years.

This package provides robust estimation for spatial error model to presence of outliers in the residuals. The classical estimation methods can be influenced by the presence of outliers in the data. We proposed a robust estimation approach based on the robustified likelihood equations for spatial error model (Vural Yildirim & Yeliz Mert Kantar (2020): Robust estimation approach for spatial error model, Journal of Statistical Computation and Simulation, <doi:10.1080/00949655.2020.1740223>).

Sentiment Analysis via deep learning and gradient boosting models with a lot of the underlying hassle taken care of to make the process as simple as possible. In addition to out-performing traditional, lexicon-based sentiment analysis (see <https://benwiseman.github.io/sentiment.ai/#Benchmarks>), it also allows the user to create embedding vectors for text which can be used in other analyses. GPU acceleration is supported on Windows and Linux.

Uplift modeling aims at predicting the causal effect of an action such as a marketing campaign on a particular individual. In order to simplify the task for practitioners in uplift modeling, we propose a combination of tools that can be separated into the following ingredients: i) quantization, ii) visualization, iii) variable selection, iv) parameters estimation and, v) model validation. For more details, see <https://dms.umontreal.ca/~murua/research/UpliftRegression.pdf>.

This package provides a color picker that can be used as an input in Shiny apps or Rmarkdown documents. The color picker supports alpha opacity, custom color palettes, and many more options. A plot color helper tool is available as an RStudio Addin, which helps you pick colors to use in your plots. A more generic color picker RStudio Addin is also provided to let you select colors to use in your R code.

This Haskell package contains code for generating high quality random numbers that follow either a uniform or normal distribution. The generated numbers are suitable for use in statistical applications.

The uniform PRNG uses Marsaglia's MWC256 (also known as MWC8222) multiply-with-carry generator, which has a period of 2^8222 and fares well in tests of randomness. It is also extremely fast, between 2 and 3 times faster than the Mersenne Twister.

Propshaft is an asset pipeline library for Rails. It's built for an era where bundling assets to save on HTTP connections is no longer urgent, where JavaScript and CSS are either compiled by dedicated Node.js bundlers or served directly to the browsers, and where increases in bandwidth have made the need for minification less pressing. These factors allow for a dramatically simpler and faster asset pipeline compared to previous options, like Sprockets.

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

This package provides a tool that imports, subsets, and exports the CongressData dataset. CongressData contains approximately 800 variables concerning all US congressional districts with data back to 1789. The dataset tracks district characteristics, members of Congress, and the political behavior of those members. Users with only a basic understanding of R can subset this data across multiple dimensions, export their search results, identify the citations associated with their searches, and more.

It facilitates the calculation of 40 different insulin sensitivity indices based on fasting, oral glucose tolerance test (OGTT), lipid (adipose), and tracer (palmitate and glycerol rate) and dxa (fat mass) measurement values. It enables easy and accurate assessment of insulin sensitivity, critical for understanding and managing metabolic disorders like diabetes and obesity. Indices calculated are described in Gastaldelli (2022). <doi:10.1002/oby.23503> and Lorenzo (2010). <doi:10.1210/jc.2010-1144>.

The 2017 American College of Cardiology and American Heart Association blood pressure guideline recommends using 10-year predicted atherosclerotic cardiovascular disease risk to guide the decision to initiate or intensify antihypertensive medication. The guideline recommends using the Pooled Cohort risk prediction equations to predict 10-year atherosclerotic cardiovascular disease risk. This package implements the original Pooled Cohort risk prediction equations and also incorporates updated versions based on more contemporary data and statistical methods.

This package provides a time series causal inference model for Randomized Controlled Trial (RCT) under spillover effect. SPORTSCausal (Spillover Time Series Causal Inference) separates treatment effect and spillover effect from given responses of experiment group and control group by predicting the response without treatment. It reports both effects by fitting the Bayesian Structural Time Series (BSTS) model based on CausalImpact', as described in Brodersen et al. (2015) <doi:10.1214/14-AOAS788>.

This package provides R functions for calculating basic effect size indices for single-case designs, including several non-overlap measures and parametric effect size measures, and for estimating the gradual effects model developed by Swan and Pustejovsky (2018) <DOI:10.1080/00273171.2018.1466681>. Standard errors and confidence intervals (based on the assumption that the outcome measurements are mutually independent) are provided for the subset of effect sizes indices with known sampling distributions.

Programming neuroscience Clinical Data Standards Interchange Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets. ADaM datasets are a mandatory part of any New Drug or Biologics License Application submitted to the United States Food and Drug Administration (FDA). Analysis derivations are implemented in accordance with the "Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team, 2021, <https://www.cdisc.org/standards/foundational/adam>). This package extends the admiral package.

This package implements an MCMC algorithm to estimate a hierarchical multinomial logit model with a normal heterogeneity distribution. The algorithm uses a hybrid Gibbs Sampler with a random walk metropolis step for the MNL coefficients for each unit. Dependent variable may be discrete or continuous. Independent variables may be discrete or continuous with optional order constraints. Means of the distribution of heterogeneity can optionally be modeled as a linear function of unit characteristics variables.

This package provides extra functions to manipulate dendrograms that build on the base functions provided by the stats package. The main functionality it is designed to add is the ability to colour all the edges in an object of class dendrogram according to cluster membership i.e. each subtree is coloured, not just the terminal leaves. In addition it provides some utility functions to cut dendrogram and hclust objects and to set/get labels.