This package provides a toolkit for making use of credentials mediated by Posit Connect'. It handles the details of communicating with the Connect API correctly, OAuth token caching, and refresh behaviour.

Create CUSUM (cumulative sum) statistics from a vector or dataframe. Also create single or faceted CUSUM control charts, with or without control limits. Accepts vector, dataframe, tibble or data.table inputs.

This package performs backward elimination with similar syntax to the stepAIC() function from the MASS package. A bounding algorithm is used to avoid fitting unnecessary models, making it much faster.

Individual-based simulations forward in time, simulating how patterns in ancestry along the genome change after admixture. Full description can be found in Janzen (2021) <doi:10.1111/2041-210X.13612>.

To assess a summary survival curve from survival probabilities and number of at-risk patients collected at various points in time in various studies, and to test the between-strata heterogeneity.

Flexible optimizer with numerous input specifications for detailed parameterisation. Designed for complex loss functions with state and parameter space constraints. Visualization tools for validation and analysis of the convergence are included.

This package provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.

This package provides functions to estimate the proportion of treatment effect explained by the surrogate marker using a Bayesian Model Averaging approach. Duan and Parast (2023) <doi:10.1002/sim.9986>.

Variance approximations for the Horvitz-Thompson total estimator in Unequal Probability Sampling using only first-order inclusion probabilities. See Matei and Tillé (2005) and Haziza, Mecatti and Rao (2008) for details.

This package implements a bioinformatics algorithm for demultiplexing multiplexed single cell datasets. It is built on a statistical model of tag read counts derived from the physical mechanism of tag cross-contamination.

Building on the infrastructure provided by the lattice package, this package provides several new high-level graphics functions and methods, as well as additional utilities such as panel and axis annotation functions.

Commander aims to be a complete solution for Ruby command-line executables. Commander bridges the gap between other terminal related libraries (OptionParser, HighLine), while providing many new features, and an elegant API.

This package provides LaTeX, pdfLaTeX, XeLaTeX and LuaLaTeX support for the Roboto Sans, Roboto Condensed, Roboto Mono, Roboto Slab and Roboto Serif families of fonts, designed by Christian Robertson and Greg Gazdowicz.

This is an R wrapper from the AWS Command Line Interface that provides methods to manage the user configuration on Amazon Web Service. You can create as many profiles as you want, manage them, and delete them. The profiles created with this tool work with all AWS products such as S3, Glacier, and EC2. It also provides a function to automatically install AWS CLI, but you can download it and install it manually if you prefer.

This package provides methods for ranking responses of a single response question or a multiple response question are described in the two papers: 1. Wang, H. (2008). Ranking Responses in Multiple-Choice Questions. Journal of Applied Statistics, 35, 465-474. <DOI:10.1080/02664760801924533> 2. Wang, H. and Huang, W. H. (2014). Bayesian Ranking Responses in Multiple Response Questions. Journal of the Royal Statistical Society: Series A (Statistics in Society), 177, 191-208. <DOI:10.1111/rssa.12009>.

This package provides a list of functions for the statistical analysis and the post-processing of the Markov Chains simulated by ChronoModel (see <http://www.chronomodel.fr> for more information). ChronoModel is a friendly software to construct a chronological model in a Bayesian framework. Its output is a sampled Markov chain from the posterior distribution of dates component the chronology. The functions can also be applied to the analyse of mcmc output generated by Oxcal software.

This package implements piecewise structural equation modeling from a single list of structural equations, with new methods for non-linear, latent, and composite variables, standardized coefficients, query-based prediction and indirect effects.

An R interface to the Base dos Dados API <https:basedosdados.github.io/mais/py_reference_api/>). Authenticate your project, query our tables, save data to disk and memory, all from R.

New approaches to parallel coordinates plots for multivariate data visualization, including applications to clustering, outlier hunting and regression diagnostics. Includes general functions for multivariate nonparametric density and regression estimation, using parallel computation.

An implementation of a new Gini covariance and correlation to measure dependence between a categorical and numerical variables. Dang, X., Nguyen, D., Chen, Y. and Zhang, J., (2018) <arXiv:1809.09793>.

Allows to create modular, reusable HTML forms which can be embedded in your shiny app with minimal effort. Features include conditional code execution on form submission, automatic input validation and input tooltips.

Routines for the analysis of nonlinear time series. This work is largely inspired by the TISEAN project, by Rainer Hegger, Holger Kantz and Thomas Schreiber: <http://www.mpipks-dresden.mpg.de/~tisean/>.

This package implements the multiway sparse clustering approach of M. Wang and Y. Zeng, "Multiway clustering via tensor block models". Advances in Neural Information Processing System 32 (NeurIPS), 715-725, 2019.

Libzita-resampler is a C++ library for resampling audio signals. It is designed to be used within a real-time processing context, to be fast, and to provide high-quality sample rate conversion.