This package provides access to mapping and results objects generated by the AssessORF package, as well as the genome sequences for the strains corresponding to those objects.

An annotation package for use with ChemmineR. This package includes data from DrugBank. DUD data can be downloaded using the "DUD()" function in ChemmineR.

This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder.

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

The assembled .bam files of whole exome sequencing data from the 1000 Genomes Project. 46 samples sequenced by the Washington University Genome Sequencing Center are included.

Includes commands for bootstrapping and permutation tests, a command for created grouped bar plots, and a demo of the quantile-normal plot for data drawn from different distributions.

Connects to the Google Trends for Health API hosted at <https://trends.google.com/trends/>, allowing projects authorized to use the health research data to query Google Trends'.

This package provides dates for public and school holidays for a number of countries and their subdivisions through the OpenHolidays API at <https://www.openholidaysapi.org/en/>.

Calculates the power and sample size for Cochran-Mantel-Haenszel tests. There are also several helper functions for working with probability, odds, relative risk, and odds ratio values.

Extension to xpose to support nlmixr2'. Provides functions to import nlmixr2 fit data into an xpose data object, allowing the use of xpose for nlmixr2 model diagnostics.

rGenomeTracks package leverages the power of pyGenomeTracks software with the interactivity of R. pyGenomeTracks is a python software that offers robust method for visualizing epigenetic data files like narrowPeak, Hic matrix, TADs and arcs, however though, here is no way currently to use it within R interactive session. rGenomeTracks wrapped the whole functionality of pyGenomeTracks with additional utilites to make to more pleasant for R users.

This package provides the official administrative boundaries of the Azores (Região Autónoma dos Açores (RAA)) as defined in the 2024 edition of the Carta Administrativa Oficial de Portugal (CAOP), published by the Direção-Geral do Território (DGT). The package includes convenience functions to import these boundaries as sf objects for spatial analysis in R. Source: <https://geo2.dgterritorio.gov.pt/caop/CAOP_RAA_2024-gpkg.zip>.

This single-character font is provided as Metafont source, and in Adobe Type 1 format. It is accompanied by a trivial LaTeX package to use the logo at various sizes.

An S4 class for facilitating the automated creation of rmarkdown files inside other packages/software even without knowing rmarkdown language. Best if implemented in functions as "recursive" style programming.

NBMiner is an implementation of the model-based mining algorithm for mining NB-frequent itemsets and NB-precise rules. Michael Hahsler (2006) <doi:10.1007/s10618-005-0026-2>.

This package provides a toolkit for querying Team Cymru <http://team-cymru.org> IP address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and Malware Hash Data Services.

Perform the Blinder-Oaxaca decomposition for generalized linear model with bootstrapped standard errors. The twofold and threefold decomposition are given, even the generalized linear model output in each group.

Estimates hazard ratios and mortality differentials for doubly-truncated data without population denominators. This method is described in Goldstein et al. (2023) <doi:10.1007/s11113-023-09785-z>.

Models, analyzes, and forecasts financial intraday signals. This package currently supports a univariate state-space model for intraday trading volume provided by Chen (2016) <doi:10.2139/ssrn.3101695>.

This package provides functions for computing the r and r* statistics for inference on an arbitrary scalar function of model parameters, plus some code for the (modified) profile likelihood.

Inspired by the classic RSA', we developed the improved Generalized Reporter Score-based Analysis (GRSA) method, implemented in the R package ReporterScore', along with comprehensive visualization methods and pathway databases. GRSA is a threshold-free method that works well with all types of biomedical features, such as genes, chemical compounds, and microbial species. Importantly, the GRSA supports multi-group and longitudinal experimental designs, because of the included multi-group-compatible statistical methods.

This Common Lisp library focuses on the small set of basic color manipulations (lightening, compliments, etc.) you might use to generate a color palette for a GUI or web page.

This package provides a common interface to multiple JSON libraries, including Oj, Yajl, the JSON gem (with C-extensions), the pure-Ruby JSON gem, NSJSONSerialization, gson.rb, JrJackson, and OkJson.

Model-based clustering for paired data based on the regression of a mixture of Bayesian hierarchical models on covariates. Zhang et al. (2023) <doi:10.1186/s12859-023-05556-x>.