This package implements the semiparametric efficient estimators of continuous-time causal models for time-varying treatments and confounders in the presence of dependent censoring (including structural failure time model and Cox proportional hazards marginal structural model). S. Yang, K. Pieper, and F. Cools (2019) <doi:10.1111/biom.12845>.

Econometric analysis of multiple-input-multiple-output production technologies with ray-based input distance functions as suggested by Price and Henningsen (2022): "A Ray-Based Input Distance Function to Model Zero-Valued Output Quantities: Derivation and an Empirical Application", <https://ideas.repec.org/p/foi/wpaper/2022_03.html>.

Quality of care is compared across accountable entities, including hospitals, provider groups, and insurance plans, using standardized quality measures. However, observed variations in quality measure performance might be the result of chance sampling or measurement errors. Contains functions for estimating the reliability of unadjusted and risk-standardized quality measures.

This package provides functions to parse and analyze logs generated by ShinyProxy containers. It extracts metadata from log file names, reads log contents, and computes summary statistics (such as the total number of lines and lines containing error messages), facilitating efficient monitoring and debugging of ShinyProxy deployments.

Pacote para a analise de experimentos com um ou dois fatores com testemunhas adicionais conduzidos no delineamento inteiramente casualizado ou em blocos casualizados. "Package for the analysis of one or two-way experiments with additional controls conducted in a completely randomized design or in a randomized block design".

This package contains a collection of trans-omics datasets generated using various sequencing technologies such as RNA-seq, Mass spectrometry and ChIP-seq. Modalities include the bulk profiling of the phosphoproteome, proteome, transcriptome and epigenome. Data reflects the timecourses of different developmental systems from the mouse or human.

This package includes size measurements, clutch observations, and blood isotope ratios for adult foraging Adélie, Chinstrap, and Gentoo penguins observed on islands in the Palmer Archipelago near Palmer Station, Antarctica. Data were collected and made available by Dr. Kristen Gorman and the Palmer Station Long Term Ecological Research (LTER) Program.

This gem provides the classes LinkHeader and LinkHeader::Link, which represent HTTP Link headers conforming to RFC 5988. Objects can be constructed from and converted to text or a JSON-friendly Array representation. They can also be used to generate corresponding HTML link elements.

Oedipus Lex is a lexer generator in the same family as Rexical and Rex. It is based primarily on generating code much like you would a hand-written lexer. It uses StrScanner within a multi-level case statement. As such, Oedipus matches on the first match, not the longest.

The ragged2e package defines new commands \Centering, \RaggedLeft, and \RaggedRight and new environments Center, FlushLeft, and FlushRight, which set ragged text and are easily configurable to allow hyphenation (the corresponding commands in LaTeX, all of whose names are lower-case, prevent hyphenation altogether).

This package provides a developer-facing interface to the Arrow Database Connectivity ('ADBC') PostgreSQL driver for the purposes of building high-level database interfaces for users. ADBC <https://arrow.apache.org/adbc/> is an API standard for database access libraries that uses Arrow for result sets and query parameters.

Statistical analysis of axial using distributions Nonnegative Trigonometric Sums (NNTS). The package includes functions for calculation of densities and distributions, for the estimation of parameters, and more. Fernandez-Duran, J.J. and Gregorio-Dominguez, M.M. (2025), Multimodal distributions for circular axial data", <doi:10.48550/arXiv.2504.04681>.

Discretize multivariate continuous data using a grid that captures the joint distribution via preserving clusters in the original data (Wang et al 2020) <doi:10.1145/3388440.3412415>. Joint grid discretization is applicable as a data transformation step to prepare data for model-free inference of association, function, or causality.

The population proportion using group testing can be estimated by different methods. Four functions including p.mle(), p.gart(), p.burrow() and p.order() are provided to implement four estimating methods including the maximum likelihood estimate, Gart's estimate, Burrow's estimate, and order statistic estimate.

This package provides a suite of statistical methods for analysis of single-cell omics data including linear model-based methods for differential abundance analysis for individual level single-cell RNA-seq data. For more details see Zhang, et al. (Submitted to Bioinformatics)<https://github.com/Lujun995/DiSC_Replication_Code>.

This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.

Allows for the specification of semi-structured deep distributional regression models which are fitted in a neural network as proposed by Ruegamer et al. (2023) <doi:10.18637/jss.v105.i02>. Predictors can be modeled using structured (penalized) linear effects, structured non-linear effects or using an unstructured deep network model.

Implementation of the automatic shift detection method for Brownian Motion (BM) or Ornsteinâ Uhlenbeck (OU) models of trait evolution on phylogenies. Some tools to handle equivalent shifts configurations are also available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

This package provides a collection of sample datasets on various fields such as automotive performance and safety data to historical demographics and socioeconomic indicators, as well as recreational data. It serves as a resource for researchers and analysts seeking to perform analyses and derive insights from classic data sets in R.

Create beautifully color-coordinated and customized themes for your xaringan slides, without writing any CSS. Complete your slide theme with ggplot2 themes that match the font and colors used in your slides. Customized styles can be created directly in your slides R Markdown source file or in a separate external script.

This package provides a package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

The spatialHeatmap package offers the primary functionality for visualizing cell-, tissue- and organ-specific assay data in spatial anatomical images. Additionally, it provides extended functionalities for large-scale data mining routines and co-visualizing bulk and single-cell data. A description of the project is available here: https://spatialheatmap.org.

This package provides utilities for processing and analyzing the files that are exported from a recorded Zoom meeting. This includes analyzing data captured through video cameras and microphones, the text-based chat, and meta-data. You can analyze aspects of the conversation among meeting participants and their emotional expressions throughout the meeting.

Syntax Tree is a suite of tools built on top of the internal CRuby parser. It provides the ability to generate a syntax tree from source, as well as the tools necessary to inspect and manipulate that syntax tree. It can be used to build formatters, linters, language servers, and more.