Generate a local library copy with relevant packages. All packages currently found within the search path - except base packages - will be copied to the directory provided and can be used later on with the .libPaths() function.
This package provides tools analyzing SingleCellExperiment objects as projects. for input into the Chevreul app downstream. Includes functions for analysis of single cell RNA sequencing data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
This package speeds up the derfinder package when using multiple cores. It is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.
This is a package for estimation of one-dimensional probability distributions including kernel density estimation, weighted empirical cumulative distribution functions, Kaplan-Meier and reduced-sample estimators for right-censored data, heat kernels, kernel properties, quantiles and integration.
ReverseDiff.jl is a fast and compile-able tape-based reverse mode AD, that implements methods to take gradients, Jacobians, Hessians, and higher-order derivatives of native Julia functions (or any callable object, really).
This gem implements bcrypt_pbkdf, which is a variant of PBKDF2 (Password-Based Key Derivation Function 2) with bcrypt-based pseudorandom function. This is currently used by net-ssh to read password encrypted Ed25519 keys.
vagrant-spec is a both a specification of how Vagrant and its various components should behave as well as a library of testing helpers that let you write your own unit and acceptance tests for Vagrant.
The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.
UniProt database provides a list of controlled vocabulary represented as keywords for genes or proteins. This is useful for summarizing gene functions in a compact way. This package provides data of keywords hierarchy and gene-keyword relations.
This package provides a set of predicates and assertions for checking the properties of files and connections. This is mainly for use by other package developers who want to include run-time testing features in their own packages.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
Generate cohorts and subsets using an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database. Cohorts are defined using CIRCE (<https://github.com/ohdsi/circe-be>) or SQL compatible with SqlRender (<https://github.com/OHDSI/SqlRender>).
This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.
An R implementation of the correlation-based method developed in the Joshi laboratory to analyse and filter processed single-cell RNAseq data. It returns a filtered version of the data containing only genes expression values unaffected by systematic noise.
This package implements low-level utilities for single-cell trajectory analysis, primarily intended for re-use inside higher-level packages. It includes a function to create a cluster-level minimum spanning tree and data structures to hold pseudotime inference results.
This package provides tools to create a lightweight Shiny wrapper for the css-loaders created by Luke Hass https://github.com/lukehaas/css-loaders. Wrapping a Shiny output will automatically show a loader when the output is (re)calculating.
th-reify-many provides functions for recursively reifying top level declarations. The main intended use case is for enumerating the names of datatypes reachable from an initial datatype, and passing these names to some function which generates instances.