This package provides tools for analyzing SingleCellExperiment objects as projects. for input into the chevreulShiny app downstream. Includes functions for analysis of single cell RNA sequencing data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.
An R implementation of the correlation-based method developed in the Joshi laboratory to analyse and filter processed single-cell RNAseq data. It returns a filtered version of the data containing only genes expression values unaffected by systematic noise.
Generate cohorts and subsets using an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database. Cohorts are defined using CIRCE (<https://github.com/ohdsi/circe-be>) or SQL compatible with SqlRender (<https://github.com/OHDSI/SqlRender>).
Compute estimates and confidence intervals of weighted averages quickly and easily. Weighted averages are computed using data.table for speed. Confidence intervals are approximated using the delta method with either using known formulae or via algorithmic or numerical integration.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
This package contains reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.
Sucker Punch is a single-process Ruby asynchronous processing library. It is perfect for asynchronous processes like emailing, data crunching or social platform manipulation; and generally recommended for jobs that are fast and non-mission critical like logs, emails, etc.
This package provides a Shiny Input for date-ranges, which pops up two calendars for selecting dates, times, or predefined ranges like "Last 30 Days". It wraps the JavaScript library daterangepicker which is available at <https://www.daterangepicker.com>.
An R client for the emailvalidation.io e-mail verification API. The API requires registration of an API key. Basic features are free, some require a paid subscription. You can find the full API documentation at <https://emailvalidation.io/docs> .
In Shiny apps, it is sometimes useful to see a plot or a table in full screen. Using Shinyfullscreen', you can easily designate the HTML elements that can be displayed on fullscreen and use buttons to trigger the fullscreen view.
This package provides a collection of functions to deal with the truncated univariate and multivariate normal and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
Testing whether two discrete variables have a functional relationship under null distributions where the two variables are statistically independent with fixed marginal counts. The fast enumeration algorithm was based on (Nguyen et al. 2020) <doi:10.24963/ijcai.2020/372>.
Imputation of longitudinal categorical covariates. We use a methodological framework which ensures that the plausibility of transitions is preserved, overfitting and colinearity issues are resolved, and confounders can be utilized. See Mamouris (2023) <doi:10.1002/sim.9919> for an overview.
The Bayesian estimation of mixture models (and more general hidden Markov models) suffers from the label switching phenomenon, making the MCMC output non-identifiable. This package can be used in order to deal with this problem using various relabelling algorithms.
This package provides functionality to construct standardised tables from health care data formatted according to the Observational Medical Outcomes Partnership (OMOP) Common Data Model. The package includes tools to build key tables such as observation period and drug era, among others.