This package provides common functionality for the dynverse packages. dynverse is created to support the development, execution, and benchmarking of trajectory inference methods.

The goal of this script is to provide a fast and lightweight script to enable responsive web designs in browsers that don't support CSS3 Media Queries.

Rosegarden is a music composition and editing environment based around a MIDI sequencer that features a rich understanding of music notation and includes basic support for digital audio.

This library provides Ruby qFFI bindings to the libsass library. This enables rendering SASS from Ruby code.

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

This is a simple data package including various data sets derived from the estrogen data for use with the puma (Propagating Uncertainty in Microarray Analysis) package.

Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.

Read large text files by splitting them in smaller files. This package also provides some convenient wrappers around fread() and fwrite() from package data.table.

This package allows you to install specified versions of R packages hosted on CRAN and provides functions to list available versions and the versions of currently installed packages.

This package provides a command line parser to be used with Rscript to write shebang scripts that gracefully accept positional and optional arguments and automatically generate usage notices.

This package provides a light weight implementation of the standard distribution functions for the inverse gamma distribution, wrapping those for the gamma distribution in the stats package.

This package provides an implementation of bee swarm plots. The bee swarm plot is a one-dimensional scatter plot like stripchart, but with closely-packed, non-overlapping points.

Excon was designed to be simple, fast and performant. It works great as a general HTTP(s) client and is particularly well suited to usage in API clients.

Guard is a command line tool to easily handle events on file system modifications. Guard automates various tasks by running custom rules whenever file or directories are modified.

This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion.

This package creates a muti-graph web page which allows the interactive exploration of differential analysis tests. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

This is a package that can be used for quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

This is an R package for pre-processing of flow and mass cytometry data. This package includes panel editing or renaming for FCS files, bead-based normalization and debarcoding.

This package contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

This package provides a command line parser inspired by Python's optparse library to be used with Rscript to write shebang scripts that accept short and long options.

This library provides a datatype which can be interpreted by apply-refact. It exists as a separate library so that applications can specify refactorings without depending on GHC.

This package provides a utility library intended at providing configurable reader macros for common tasks such as accessors, hash-tables, sets, uiop:run-program, arrays and a few others.

This gem makes mathematical operations more precise in Ruby and integrates other mathematical standard libraries. Prior to Ruby 2.5, mathn was part of the Ruby standard library.

This gem is a library that provides trigonometric and transcendental functions for complex numbers. The functions in this module accept integers, floating-point numbers or complex numbers as arguments.