This package provides classes and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters are used by ensembldb, Organism.dplyr, and other packages.
Allows one to assess the stability of individual objects, clusters and whole clustering solutions based on repeated runs of the K-means and K-medoids partitioning algorithms.
This package provides tools for manipulating sound files for bioacoustic analysis, and preparing analyses these for publication. The package validates that values are physically possible wherever feasible.
This package creates bivariate choropleth maps using Leaflet'. This package provides tools for visualizing the relationship between two variables through a color matrix representation on an interactive map.
Using Australian Bureau of Statistics indices, provides functions that convert historical, nominal statistics to real, contemporary values without worrying about date input quality, performance, or the ABS catalogue.
An implementation of the Canny Edge Detector for detecting edges in images. The package provides an interface to the algorithm available at <https://github.com/Neseb/canny>.
Adds menu items for case 2 (profile case) best-worst scaling (BWS2) to the R Commander. BWS2 is a question-based survey method that constructs profiles (combinations of attribute levels) using an orthogonal array, asks respondents to select the best and worst levels in each profile, and measures preferences for attribute levels by analyzing the responses. For details, see Aizaki and Fogarty (2019) <doi:10.1016/j.jocm.2019.100171>.
Adds menu items for case 3 (multi-profile) best-worst scaling (BWS3) to the R Commander. BWS3 is a question-based survey method that designs various combinations of attribute levels (profiles), asks respondents to select the best and worst profiles in each choice set, and then measures preferences for the attribute levels by analyzing the responses. For details on BWS3, refer to Louviere et al. (2015) <doi:10.1017/CBO9781107337855>.
MiniTest Moar add some additional features and changes some default behaviours in MiniTest. For instance, Moar replaces the MiniTest Object#stub with a global stub method.
Store UCSC RepeatMasker AnnotationHub resource metadata. Provide provenance and citation information for UCSC RepeatMasker AnnotationHub resources. Illustrate in a vignette how to access those resources.
Battery reduction is a method used in data reduction. It uses Gram-Schmidt orthogonal rotations to find out a subset of variables best representing the original set of variables.
Interact with the Google Tag Manager API <https://developers.google.com/tag-platform/tag-manager/api/v2>, enabling scripted deployments and updates across multiple tags, triggers, variables and containers.
Novel responsive tools for developing R based Shiny dashboards and applications. The scripts and style sheets are based on jQuery <https://jquery.com/> and Bootstrap <https://getbootstrap.com/>.
RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data. It controls FDR for multiple testing and utilizes the average read count and dispersion distributions from real data to estimate a more reliable sample size. It is also equipped with several unique features, including estimation for interested genes or pathway, power curve visualization, and parameter optimization.
This package provides a better error page for Rails and other Rack apps. Includes source code inspection, a live REPL and local/instance variable inspection for all stack frames.
OSGi, for Open Services Gateway initiative framework, is a module system and service platform for the Java programming language. This package contains the definition of common types in osgi packages.
queue_classic is a queuing library for Ruby applications (Rails, Sinatra, etc.) queue_classic features asynchronous job polling, database maintained locks and has a single dependency, pg.
Define the output format of rmarkdown files with shared output yaml frontmatter content. Rather than modifying a shared yaml file, use integers to easily switch output formats for rmarkdown files.
Detection of migration events and segments of continuous residence based on irregular time series of location data as published in Chi et al. (2020) <doi:10.1371/journal.pone.0239408>.
Given an arbitrary set of spatial regions and road networks, generate a set of representative points, or pseudohouseholds, that can be used for travel burden analysis. Parallel processing is supported.
Spectral emission data for some frequently used light emitting diodes available as electronic components. Part of the r4photobiology suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
The main aim of this package is to work on lists, especially with random operations. The hidden aim is to build a personal collection of exercises with different data for each pupil.
The randomwalk package provides a user command, \RandomWalk, to draw random walks with a given number of steps. Lengths and angles of the steps can be customized in various ways.
References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr <https://bioconductor.org/packages/clustifyr> to assign cell type identities.