Computes Bayesian posterior distributions of predictions, marginal effects, and differences of marginal effects for various generalized linear models. Importantly, the posteriors are on the mean (response) scale, allowing for more natural interpretation than summaries on the link scale. Also, predictions and marginal effects of the count probabilities for Poisson and negative binomial models can be computed.

This package provides a minor mode for interacting with a Julia REPL running inside Emacs. The julia process is started in an ANSI terminal (term), which allows text formatting and colors, and interaction with the help system and the debugger. It is recommended that you use this minor mode with the package emacs-julia-mode.

The rotpages package allows you to format documents where small sets of pages are rotated by 180 degrees and rearranged, so that they can be read by turning the printed copy upside-down. It was developed for collecting exercises and solutions: using the package, you can print the exercise text normally and the solutions rotated.

Tools, methods and processes for the management of analysis workflows. These lightweight solutions facilitate structuring R&D activities. These solutions were developed to comply with Good Documentation Practice (GDP), with ALCOA+ principles as proposed by the U.S. FDA, and with FAIR principles as discussed by Jacobsen et al. (2017) <doi:10.1162/dint_r_00024>.

This package provides functions to calculate power and sample size for testing (1) mediation effects; (2) the slope in a simple linear regression; (3) odds ratio in a simple logistic regression; (4) mean change for longitudinal study with 2 time points; (5) interaction effect in 2-way ANOVA; and (6) the slope in a simple Poisson regression.

Store persistent and synchronized data from shiny inputs within the browser. Refresh shiny applications and preserve user-inputs over multiple sessions. A database-like storage format is implemented using Dexie.js <https://dexie.org>, a minimal wrapper for IndexedDB'. Transfer browser link parameters to shiny input or output values. Store app visitor views, likes and followers.

Soil health assessment builds information to improve decision in soil management. It facilitates assessment of soil conditions for crop suitability [such as those given by FAO <https://www.fao.org/land-water/databases-and-software/crop-information/en/>], groundwater recharge, fertility, erosion, salinization [<doi:10.1002/ldr.4211>], carbon sequestration, irrigation potential, and status of soil resources.

Collection of Xenium spatial transcriptomics datasets provided by 10x Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE), to facilitate seamless integration into various applications, including examples, demonstrations, and tutorials. The constructed data objects include gene expression profiles, per-transcript location data, centroid, segmentation boundaries (e.g., cell or nucleus boundaries), and image.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This library provides an implementation of WebSockets, RFC6455. It allows for both synchronous (like TcpStream) and asynchronous usage and is easy to integrate into any third-party event loops including MIO. The API design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.

This package provides a streamlined and user-friendly framework for bootstrapping in state space models, particularly when the number of subjects/units (n) exceeds one, a scenario commonly encountered in social and behavioral sciences. For an introduction to state space models in social and behavioral sciences, refer to Chow, Ho, Hamaker, and Dolan (2010) <doi:10.1080/10705511003661553>.

This package provides functions to create confidence intervals for ratios of Poisson rates under misclassification using double sampling. Implementations of the methods described in Kahle, D., P. Young, B. Greer, and D. Young (2016). "Confidence Intervals for the Ratio of Two Poisson Rates Under One-Way Differential Misclassification Using Double Sampling." Computational Statistics & Data Analysis, 95:122â 132.

Extends the test-based Bayes factor (TBF) methodology to multinomial regression models and discrete time-to-event models with competing risks. The TBF methodology has been well developed and implemented for the generalised linear model [Held et al. (2015) <doi:10.1214/14-STS510>] and for the Cox model [Held et al. (2016) <doi:10.1002/sim.7089>].

Fit Thurstonian Item Response Theory (IRT) models in R. This package supports fitting Thurstonian IRT models and its extensions using Stan', lavaan', or Mplus for the model estimation. Functionality for extracting results, making predictions, and simulating data is provided as well. References: Brown & Maydeu-Olivares (2011) <doi:10.1177/0013164410375112>; Bürkner et al. (2019) <doi:10.1177/0013164419832063>.

Processed RNA-seq data for 1,139 human primary colorectal tissue samples across three phenotypes, including tumor, normal adjacent-to-tumor, and healthy, available as Synapse ID syn22237139 on synapse.org. Data have been parsed into SummarizedExperiment objects available via ExperimentHub to facilitate reproducibility and extension of results from Dampier et al. (PMCID: PMC7386360, PMID: 32764205).

HTTP::Cookie is a Ruby library to handle HTTP Cookies based on RFC 6265. It has been designed with security, standards compliance and compatibility in mind, to behave just the same as today's major web browsers. It has built-in support for the legacy cookies.txt and cookies.sqlite formats of Mozilla Firefox.

This package provides tools to create and manipulate probability distributions using S3. Generics pdf(), cdf(), quantile(), and random() provide replacements for base R's d/p/q/r style functions. Functions and arguments have been named carefully to minimize confusion for students in intro stats courses. The documentation for each distribution contains detailed mathematical notes.

This package provides a tool to calculate and plot estimates from models in which an interaction between the main predictor and a continuous covariate has been specified. Methods used in the package refer to Harrell Jr FE (2015, ISBN:9783319330396); Durrleman S, Simon R. (1989) <doi:10.1002/sim.4780080504>; Greenland S. (1995) <doi:10.1097/00001648-199507000-00005>.

Converts video files to mp3', merges multiple audio files and trims audio files using FFmpeg', which is dynamically downloaded to avoid bundling any third-party binaries. Users must ensure compliance with the license terms of FFmpeg when using the package. See <https://github.com/BtbN/FFmpeg-Builds/releases/download/latest/ffmpeg-master-latest-win64-gpl.zip> for details.