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python-rich-click 1.6.1
Propagated dependencies: python-click@8.1.7 python-importlib-metadata@5.2.0 python-rich@13.7.1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/ewels/rich-click
Licenses: Expat
Synopsis: Format click help output nicely with rich
Description:

Click is a "Python package for creating beautiful command line interfaces". Rich is a "Python library for rich text and beautiful formatting in the terminal". The intention of rich-click is to provide attractive help output from click, formatted with rich, with minimal customization required.

r-photobiologysun 0.5.0
Propagated dependencies: r-photobiology@0.13.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: http://www.r4photobiology.info
Licenses: GPL 2+
Synopsis: Data for Sunlight Spectra
Description:

Data for the extraterrestrial solar spectral irradiance and ground level solar spectral irradiance and irradiance. In addition data for shade light under vegetation and irradiance time series from different broadband sensors. Part of the r4photobiology suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

r-shiny-telemetry 0.3.1
Propagated dependencies: r-tidyr@1.3.1 r-stringr@1.5.1 r-shiny@1.10.0 r-rsqlite@2.3.11 r-rlang@1.1.6 r-r6@2.6.1 r-purrr@1.0.4 r-odbc@1.6.1 r-lubridate@1.9.4 r-logger@0.4.0 r-lifecycle@1.0.4 r-jsonlite@2.0.0 r-httr2@1.1.2 r-htmltools@0.5.8.1 r-glue@1.8.0 r-dplyr@1.1.4 r-digest@0.6.37 r-checkmate@2.3.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://appsilon.github.io/shiny.telemetry/
Licenses: LGPL 3
Synopsis: 'Shiny' App Usage Telemetry
Description:

Enables instrumentation of Shiny apps for tracking user session events such as input changes, browser type, and session duration. These events can be sent to any of the available storage backends and analyzed using the included Shiny app to gain insights about app usage and adoption.

r-shinyscreenshot 0.2.1
Propagated dependencies: r-uuid@1.2-1 r-shiny@1.10.0 r-jsonlite@2.0.0 r-htmltools@0.5.8.1 r-base64enc@0.1-3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/daattali/shinyscreenshot
Licenses: Expat
Synopsis: Capture Screenshots of Entire Pages or Parts of Pages in 'Shiny'
Description:

Capture screenshots in Shiny applications. Screenshots can either be of the entire viewable page, or a specific section of the page. The captured image is automatically downloaded as a PNG image, or it can also be saved on the server. Powered by the html2canvas JavaScript library.

r-alabaster-bumpy 1.8.1
Propagated dependencies: r-s4vectors@0.46.0 r-rhdf5@2.52.0 r-matrix@1.7-3 r-iranges@2.42.0 r-bumpymatrix@1.16.0 r-biocgenerics@0.54.0 r-alabaster-base@1.8.0
Channel: guix-bioc
Location: guix-bioc/packages/a.scm (guix-bioc packages a)
Home page: https://bioconductor.org/packages/alabaster.bumpy
Licenses: Expat
Synopsis: Save and Load BumpyMatrices to/from file
Description:

Save BumpyMatrix objects into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

cl-repl-utilities 0.0.0-1.7e300df
Channel: guix
Location: gnu/packages/lisp-xyz.scm (gnu packages lisp-xyz)
Home page: https://github.com/m-n/repl-utilities
Licenses: FreeBSD
Synopsis: Ease common tasks at the Common Lisp REPL
Description:

repl-utilities is a set of utilities which ease life at the REPL. It includes three sorts of features: introspective procedures, miscellaneous utility functions, and, pulling them together, methods to conveniently keep these symbols and optionally additional symbols available in whichever package you switch to.

r-sparsehessianfd 0.3.3.7
Propagated dependencies: r-rcppeigen@0.3.4.0.2 r-rcpp@1.0.14 r-matrix@1.7-3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://braunm.github.io/sparseHessianFD/
Licenses: FSDG-compatible
Synopsis: Numerical Estimation of Sparse Hessians
Description:

Estimates Hessian of a scalar-valued function, and returns it in a sparse Matrix format. The sparsity pattern must be known in advance. The algorithm is especially efficient for hierarchical models with a large number of heterogeneous units. See Braun, M. (2017) <doi:10.18637/jss.v082.i10>.

ecl-markup-reader 0.0.1-1.d2d4d7b
Dependencies: ecl-alexandria@1.4-0.009b7e5 ecl-cl-str@0.21 ecl-named-readtables@0.9-4.d5ff162 ecl-trivial-gray-streams@2.0-1.2b3823e
Channel: guix
Location: gnu/packages/lisp-xyz.scm (gnu packages lisp-xyz)
Home page: https://github.com/moderninterpreters/markup
Licenses: ASL 2.0
Synopsis: Reader-macro to read HTML tags inside of Common Lisp code
Description:

Markup allows the use of HTML syntax with in Common Lisp code. This has the advantage of being able to copy HTML snippets and have them instantly be functional, less double quotes than a s-expression approach, and designers will be able to understand the embedded HTML.

ruby-html-proofer 5.0.3
Propagated dependencies: ruby-addressable@2.8.1 ruby-mercenary@0.4.0 ruby-nokogiri@1.15.2 ruby-parallel@1.21.0 ruby-rainbow@3.0.0 ruby-typhoeus@1.4.0 ruby-yell@2.2.2
Channel: guix
Location: gnu/packages/ruby.scm (gnu packages ruby)
Home page: https://github.com/gjtorikian/html-proofer
Licenses: Expat
Synopsis: Test your rendered HTML files to make sure they're accurate
Description:

HTMLProofer is a set of tests to validate your HTML output. These tests check if your image references are legitimate, if they have alt tags, if your internal links are working, and so on. It's intended to be an all-in-one checker for your output.

texlive-readarray 2025.2
Channel: guix
Location: gnu/packages/tex.scm (gnu packages tex)
Home page: https://www.ctan.org/pkg/readarray
Licenses: LPPL 1.3
Synopsis: Read, store and recall array-formatted data
Description:

This package allows the user to input formatted data into elements of a 2-D or 3-D array and to recall that data at will by individual cell number. The data can be but need not be numerical in nature. It can be, for example, formatted text.

r-commondatamodel 1.0.1
Propagated dependencies: r-stringr@1.5.1 r-sqlrender@1.19.2 r-rmarkdown@2.29 r-rjava@1.0-11 r-readr@2.1.5 r-dplyr@1.1.4 r-dbi@1.2.3 r-databaseconnector@6.4.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CommonDataModel
Licenses: ASL 2.0
Synopsis: OMOP CDM DDL and Documentation Generator
Description:

Generates the scripts required to create an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) database and associated documentation for supported database platforms. Leverages the SqlRender package to convert the Data Definition Language (DDL) script written in parameterized Structured Query Language (SQL) to the other supported dialects.

r-twangcontinuous 1.0.0
Propagated dependencies: r-xtable@1.8-4 r-survey@4.4-2 r-rcpp@1.0.14 r-lattice@0.22-7 r-gbm@2.2.2
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://cran.r-project.org/package=twangContinuous
Licenses: GPL 2+
Synopsis: Toolkit for Weighting and Analysis of Nonequivalent Groups - Continuous Exposures
Description:

This package provides functions for propensity score estimation and weighting for continuous exposures as described in Zhu, Y., Coffman, D. L., & Ghosh, D. (2015). A boosting algorithm for estimating generalized propensity scores with continuous treatments. Journal of Causal Inference, 3(1), 25-40. <doi:10.1515/jci-2014-0022>.

r-simplermarkdown 0.0.6
Propagated dependencies: pandoc@2.19.2 r-rjson@0.2.23
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/djvanderlaan/simplermarkdown
Licenses: GPL 3+
Synopsis: Simple engine for generating reports using R
Description:

This package runs R-code present in a pandoc markdown file and includes the resulting output in the resulting markdown file. This file can then be converted into any of the output formats supported by pandoc. The package can also be used as an engine for writing package vignettes.

r-imbalancedatrel 0.1.6
Propagated dependencies: r-smotewb@1.2.2 r-rfast@2.1.5.1 r-rcccd@0.3.2 r-rann@2.6.2
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://doi.org/10.1007/s10994-025-06755-8
Licenses: Expat
Synopsis: Relocated Data Oversampling for Imbalanced Data Classification
Description:

Relocates oversampled data from a specific oversampling method to cover area determined by pure and proper class cover catch digraphs (PCCCD). It prevents any data to be generated in class overlapping area. For more details, see the corresponding publication: F. SaÄ lam (2025) <doi:10.1007/s10994-025-06755-8>.

r-predictorselect 0.1.0
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PredictorSelect
Licenses: GPL 2+ GPL 3+
Synopsis: Out-of-Sample Predictability in Predictive Regressions with Many Predictor Candidates
Description:

Consider a linear predictive regression setting with a potentially large set of candidate predictors. This work is concerned with detecting the presence of out of sample predictability based on out of sample mean squared error comparisons given in Gonzalo and Pitarakis (2023) <doi:10.1016/j.ijforecast.2023.10.005>.

r-allcontributors 0.2.2
Propagated dependencies: r-magrittr@2.0.3 r-gitcreds@0.1.2 r-gh@1.4.1 r-gert@2.1.5 r-curl@6.2.2 r-clipr@0.8.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/ropensci/allcontributors
Licenses: GPL 3
Synopsis: Acknowledge all Contributors to a Project
Description:

Acknowledge all contributors to a project via a single function call. The function appends to a README or other specified file(s) a table with names of all individuals who contributed via code or repository issues. The package also includes several additional functions to extract and quantify contributions to any repository.

r-sensitivityfull 1.5.6
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sensitivityfull
Licenses: GPL 2
Synopsis: Sensitivity Analysis for Full Matching in Observational Studies
Description:

Sensitivity to unmeasured biases in an observational study that is a full match. Function senfm() performs tests and function senfmCI() creates confidence intervals. The method uses Huber's M-statistics, including least squares, and is described in Rosenbaum (2007, Biometrics) <DOI:10.1111/j.1541-0420.2006.00717.x>.

r-samplingbigdata 1.0.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/jlisic/SamplingBigData
Licenses: GPL 2+
Synopsis: Sampling Methods for Big Data
Description:

Select sampling methods for probability samples using large data sets. This includes spatially balanced sampling in multi-dimensional spaces with any prescribed inclusion probabilities. All implementations are written in C with efficient data structures such as k-d trees that easily scale to several million rows on a modern desktop computer.

r-decomptumor2sig 2.24.0
Dependencies: perl@5.36.0
Propagated dependencies: r-biocgenerics@0.54.0 r-biostrings@2.76.0 r-bsgenome-hsapiens-ucsc-hg19@1.4.3 r-data-table@1.17.2 r-genomeinfodb@1.44.0 r-genomicfeatures@1.60.0 r-genomicranges@1.60.0 r-ggplot2@3.5.2 r-ggseqlogo@0.2 r-gridextra@2.3 r-matrix@1.7-3 r-plyr@1.8.9 r-quadprog@1.5-8 r-readxl@1.4.5 r-s4vectors@0.46.0 r-summarizedexperiment@1.38.1 r-txdb-hsapiens-ucsc-hg19-knowngene@3.2.2 r-variantannotation@1.54.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://rmpiro.net/decompTumor2Sig/
Licenses: GPL 2
Synopsis: Decomposition of individual tumors into mutational signatures
Description:

The package uses quadratic programming for signature refitting, i.e., to decompose the mutation catalog from an individual tumor sample into a set of given mutational signatures (either Alexandrov-model signatures or Shiraishi-model signatures), computing weights that reflect the contributions of the signatures to the mutation load of the tumor.

retroarch-minimal 1.20.0
Dependencies: alsa-lib@1.2.11 dbus@1.15.8 eudev@3.2.14 ffmpeg@6.1.1 flac@1.4.3 fontconfig-minimal@2.14.0 freetype@2.13.0 glslang@1.3.280.0 libxinerama@1.1.5 libxkbcommon@1.6.0 libxml2@2.9.14 libxrandr@1.5.4 libxv@1.0.13 mbedtls@2.28.7 mesa@24.3.2 openal@1.23.1 openssl@3.0.8 pulseaudio@16.1 python@3.11.11 qtbase@5.15.15 sdl2@2.30.8 spirv-cross@1.3.280.0 spirv-headers@1.3.280.0 spirv-tools@1.3.280.0 v4l-utils@1.22.1 vulkan-loader@1.3.280.0 wayland@1.23.1 zlib@1.3
Channel: guix
Location: gnu/packages/emulators.scm (gnu packages emulators)
Home page: https://www.libretro.com/
Licenses: GPL 3+ ASL 2.0 Expat Modified BSD
Synopsis: Reference frontend for the libretro API
Description:

Libretro is a simple but powerful development interface that allows for the easy creation of emulators, games and multimedia applications that can plug straight into any libretro-compatible frontend. RetroArch is the official reference frontend for the libretro API, currently used by most as a modular multi-system game/emulator system.

trytond-user-role 6.2.0
Propagated dependencies: trytond@7.4.4
Channel: guix
Location: gnu/packages/tryton.scm (gnu packages tryton)
Home page: https://docs.tryton.org/projects/modules-user-role
Licenses: GPL 3+
Synopsis: Tryton module to manage roles on users
Description:

This package provides a Tryton module for assigning roles to user instead of groups. A Role is defined by a set of groups. When a role is added to a user, it overrides the existing groups. A role can be added to a user for a period of time only.

r-muerelativerisk 0.1.1
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=mueRelativeRisk
Licenses: GPL 3
Synopsis: Relative Risk Based on the Ratio of Median Unbiased Estimates
Description:

This package implements an estimator for relative risk based on the median unbiased estimator. The relative risk estimator is well defined and performs satisfactorily for a wide range of data configurations. The details of the method are available in Carter et al (2010) <doi:10.1111/j.1467-9876.2010.00711.x>.

r-nhsrwaitinglist 0.1.1
Propagated dependencies: r-rlang@1.1.6 r-randomnames@1.6-0.0 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://nhs-r-community.github.io/NHSRwaitinglist/
Licenses: Expat
Synopsis: Waiting List Metrics Using Queuing Theory
Description:

Waiting list management using queuing theory to analyse, predict and manage queues, based on the approach described in Fong et al. (2022) <doi:10.1101/2022.08.23.22279117>. Aimed at UK National Health Service (NHS) applications, waiting list summary statistics, target-value calculations, waiting list simulation, and scheduling functions are included.

r-surv2samplecomp 1.0-5
Propagated dependencies: r-survival@3.8-3 r-plotrix@3.8-4 r-flexsurv@2.3.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=surv2sampleComp
Licenses: GPL 2
Synopsis: Inference for Model-Free Between-Group Parameters for Censored Survival Data
Description:

This package performs inference of several model-free group contrast measures, which include difference/ratio of cumulative incidence rates at given time points, quantiles, and restricted mean survival times (RMST). Two kinds of covariate adjustment procedures (i.e., regression and augmentation) for inference of the metrics based on RMST are also included.

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