This is a Python package for rendering rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal.

TTFunk is a TrueType font parser written in pure Ruby. It is used as part of the Prawn PDF generator.

Base annotation databases for mouse, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

This is a Python package for rendering rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal.

This package is a pipeline to identify the key gene regulators in a biological process, for example in cell differentiation and in cell development after stimulation. There are four major steps in this pipeline: (1) differential expression analysis; (2) regulator-target network inference; (3) enrichment analysis; and (4) regulators scoring and ranking.

This package provides classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

This package contains tools to perform additional quality checks on R packages that are to be submitted to the Bioconductor repository.

This package provides a collection of evaluation metrics, including loss, score and utility functions, that measure regression, classification and ranking performance.

This package exposes R bindings to jsTree, a JavaScript library that supports interactive trees, to enable rich, editable trees in Shiny.

lxqt-runner provides a GUI that comes up on the desktop and allows for launching applications or shutting down the system.

Docile is a Ruby library that provides an interface for creating embedded domain specific languages (EDSLs) that manipulate existing Ruby classes.

This library uses the output of the ps command to create a process tree data structure for the current host.

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

This package provides methods and functionality to analyze flow data that is beyond the basic infrastructure provided by the flowCore package.

This package provides functions to estimate a bipartite graph of protein complex membership using AP-MS data.

This package provides an array-like container for convenient access and manipulation of HDF5 datasets. It supports delayed operations and block processing.

This package provides dataset samples (Affymetrix: Expression, Gene, Exon, SNP; NimbleGen: Expression, Tiling) to be used with the oligo package.

This package provides tools to create a measure of inter-point dissimilarity useful for clustering mixed data, and, optionally, perform the clustering.

This package provides routines for the polynomial spline fitting routines hazard regression, hazard estimation with flexible tails, logspline, lspec, polyclass, and polymars.

This package provides a Ruby wrapper for the OAuth 2.0 protocol built with a similar style to the original OAuth spec.

Rendering Extension defines a protocol for a digital image composition as the foundation of a new rendering model within the X Window System.

Data objects necessary to some mCSEA package functions. There are also example data objects to illustrate mCSEA package functionality.

Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod) assembled using data from public repositories.

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.