Read-only-cfg is an Emacs minor mode that can automatically make files read-only based on user configuration. User configuration may be prefix directories or regex patterns.

Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.

This package provides several methods to integrate functions over the unit sphere and ball in n-dimensional Euclidean space. Routines for converting to/from multivariate polar/spherical coordinates are also provided.

Mupen64Plus is a cross-platform plugin-based Nintendo 64 (N64) emulator which is capable of accurately playing many games. This package contains the high-level emulation (HLE) RSP processor plugin.

This package repeats item of an index if a page or column break occurs within a list of subitems. This helps to find out to which main item a subitem belongs.

An R Commander plug-in providing an integrated solution to perform a series of text mining tasks such as importing and cleaning a corpus, and analyses like terms and documents counts, vocabulary tables, terms co-occurrences and documents similarity measures, time series analysis, correspondence analysis and hierarchical clustering. Corpora can be imported from spreadsheet-like files, directories of raw text files, as well as from Dow Jones Factiva', LexisNexis', Europresse and Alceste files.

Adjusts longitudinal regression models using Bayesian methodology for covariance structures of composite symmetry (SC), autoregressive ones of order 1 AR (1) and autoregressive moving average of order (1,1) ARMA (1,1).

This package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.

This is a versioned snapshot of the files containing metadata about each known libretro core. The snapshot is taken from the libretro-super repository.

The mixed integer programming library MIPLIB (see <http://miplib.zib.de/>) is commonly used to compare the performance of mixed integer optimization solvers. This package provides functions to access MIPLIB from the R Optimization Infrastructure ('ROI'). More information about MIPLIB can be found in the paper by Koch et al. available at <http://mpc.zib.de/index.php/MPC/article/viewFile/56/28>. The README.md file illustrates how to use this package.

This package provides functions to perform statistical inference of data organized in contingency tables. This package is a companion to the "Statistical Analysis of Contingency Tables" book by Fagerland et al. <ISBN 9781466588172>.

Fit linear splines to species time series to detect population growth scenarios based on Hyndman, R J and Mesgaran, M B and Cousens, R D (2015) <doi:10.1007/s10530-015-0962-8>.

Randomizing exams with LaTeX'. If you can compile your main document with LaTeX', the program should be able to compile the randomized versions without much extra effort when creating the document.

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Expand region increases the selected region by semantic units. Just keep pressing the key until it selects what you want. There's also er/contract-region if you expand too far.

This package provides a utility function for Org buffers that makes a _SRC block with the appropriate language annotation for code that has been copied from an Emacs major mode.

Computes treatment patterns within a given cohort using the Observational Medical Outcomes Partnership (OMOP) common data model (CDM). As described in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.

This package provides tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

This package provides a custom CSS/HTML or GIF/image file for the loading screen in R Shiny. It also can use the marquee to have a custom text loading screen.

The sexp_processor package is derived from ParseTree, but contrary to ParseTree, it includes all the generic S-exp processing tools. Amongst the included tools are Sexp, SexpProcessor and Environment

Inference with control function methods for nonlinear outcome models when the model is known ('Guo and Small (2016) <arXiv:1602.01051>) and when unknown but semiparametric ('Li and Guo (2021) <arXiv:2010.09922>).

This package provides functionality for analytically calculating parameters (via the InteractionPoweR package) useful for simulation of moderated multiple regression, based on the correlations among the predictors and outcome and the reliability of predictors.

Plots calibration curves and computes statistics for assessing calibration performance. See De Cock Campo (2023) <doi:10.48550/arXiv.2309.08559> and Van Calster et al. (2016) <doi:10.1016/j.jclinepi.2015.12.005>.

This package contains methods for the estimation of Shannon's entropy, variants of Renyi's entropy, mutual information, Kullback-Leibler divergence, and generalized Simpson's indices. The estimators used have a bias that decays exponentially fast.