This package provides a set of annotation maps describing the entire Disease Ontology.

This package provides functions for robust principal component analysis (PCA) by projection pursuit.

This package provides functions for plotting graphical shapes such as ellipses, circles, cylinders, arrows, ...

This package provides tools to accurately benchmark and analyze execution times for R expressions.

This package provides a set of functions for data manipulation with list objects, including mapping, filtering, grouping, sorting, updating, searching, and other useful functions. Most functions are designed to be pipeline friendly so that data processing with lists can be chained.

Calculate the flow of particles between polygons by two integration methods: integration by a cubature method and integration on a grid of points. Annie Bouvier, Kien Kieu, Kasia Adamczyk and Herve Monod (2009) <doi:10.1016/j.envsoft.2008.11.006>.

Converts LESS to CSS. It uses V8 engine, where LESS parser is run. Functions for LESS text, file or folder conversion are provided. This work was supported by a junior grant research project by Czech Science Foundation GACR no. GJ18-04150Y'.

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.

This package implements the algorithms for solving sparse generalized eigenvalue problem by Tan, et. al. (2018). Sparse Generalized Eigenvalue Problem: Optimal Statistical Rates via Truncated Rayleigh Flow. To appear in Journal of the Royal Statistical Society: Series B. <arXiv:1604.08697>.

Translation of the MATLAB program Carb (Nathan and Mauz 2008 <DOI:10.1016/j.radmeas.2007.12.012>; Mauz and Hoffmann 2014) for dose rate modelling for carbonate-rich samples in the context of trapped charged dating (e.g., luminescence dating) applications.

This package creates all leave-one-out models and produces predictions for test samples.

Various supervised and unsupervised binning tools including using entropy, recursive partition methods and clustering.

This package provides tools for downloading historical financial data from the www.belex.rs.

To re-calculate the coefficients and the standard deviation when changing the reference group.

This package provides a parallel backend for the %dopar% function using the Rmpi package.

Runs an evolutionary algorithm using the AlphaSimR machinery <doi:10.1093/g3journal/jkaa017> .

Modular implementation of the Differential Evolution algorithm for experimenting with different types of operators.

Likelihood ratio tests for genome-wide association and genome-wide linkage analysis under heterogeneity.

Generate Manhattan, Q-Q, and PCA plots from GWAS and PCA results using ggplot2'.

Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data.

Fit and plot macroecological patterns predicted by the Maximum Entropy Theory of Ecology (METE).

Compute standard Non-Compartmental Analysis (NCA) parameters for typical pharmacokinetic analyses and summarize them.

An alternative data structure and visual rendering for the profiling information generated by Rprof.

Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data.