This package allows you to create Q-Q and Manhattan plots for GWAS data from PLINK results.

This package provides a cross-platform solution to open files, directories or URLs with their associated programs.

Pcb-rnd is a Printed Circuit Board layout editor, part of the RiNgDove EDA suite.

Pg is the Ruby interface to the PostgreSQL RDBMS. It works with PostgreSQL 9.3 and later.

Included here are babel routines for identifying unusual ribosome protected fragment counts given mRNA counts.

Regression for a discrete response, where the conditional distribution is modelled via a discrete Weibull distribution.

Simulation of Electric Vehicles charging sessions using Gaussian models, together with time-series power demand calculations.

This package provides tools to quickly compile taxonomic and distribution data from the Brazilian Flora 2020.

Datasets analysed in the book Antony Unwin (2024, ISBN:978-0367674007) "Getting (more out of) Graphics".

Sequential change-point tests, parameters estimation, and goodness-of-fit tests for generalized Ornstein-Uhlenbeck processes.

An R-package for calculating sample size of a survival trial with or without cure fractions.

This package provides tools for phoneticians and phonologists, including functions for normalization and plotting of vowels.

Fit a spatial-temporal occupancy models using a probit formulation instead of a traditional logit model.

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

This package provides functions for constructing mathematical models of dynamical systems from measured input-output data.

This package provides R Markdown output formats to use Tufte styles for PDF and HTML output.

Estimation of transition probabilities for the illness-death model and or the three-state progressive model.

Perform the calculation of W-test, diagnostic checking, calculate minor allele frequency (MAF) and odds ratio.

This package provides a toolkit for working with Biological Observation Matrix (BIOM) files. Features include reading/writing all BIOM formats, rarefaction, alpha diversity, beta diversity (including UniFrac), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided.

R interface to the CSDP semidefinite programming library. Installs version 6.1.1 of CSDP from the COIN-OR website if required. An existing installation of CSDP may be used by passing the proper configure arguments to the installation command. See the INSTALL file for further details.

This package contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.

This package provides tools for differential expression analysis at both gene and isoform level using RNA-seq data

This package implements the method csSAM that computes cell-specific differential expression from measured cell proportions using SAM.

This package provides various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.