An extension of the Fisher Scoring Algorithm to combine PLS regression with GLM estimation in the multivariate context. Covariates can also be grouped in themes.

This package provides tools for visibility analysis in geospatial data. It offers functionality to perform isovist calculations, using arbitrary geometries as both viewpoints and occluders.

An implementation of the variable neighborhood trust region algorithm Bierlaire et al. (2009) "A Heuristic for Nonlinear Global Optimization" <doi:10.1287/ijoc.1090.0343>.

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

SCONE is an R package for comparing and ranking the performance of different normalization schemes for single-cell RNA-seq and other high-throughput analyses.

The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.

This is a port of the type guesser from the readr package, the so-called readr first edition parsing engine, now superseded by vroom.

This package provides software to accompany the book "Wavelet Methods for Time Series Analysis", Donald B. Percival and Andrew T. Walden, Cambridge University Press, 2000.

This package provides functions for obtaining the density, random variates and maximum likelihood estimates of the Zero-truncated Poisson lognormal distribution and their mixture distribution.

Joyplots provide a convenient way of visualizing changes in distributions over time or space. This package enables the creation of such plots in ggplot2.

This package provides functions for working with legends and axis lines of ggplot2, facets that repeat axis lines on all panels, and some knitr extensions.

Quantitative Structure-Activity Relationship (QSAR) modeling is a valuable tool in computational chemistry and drug design, where it aims to predict the activity or property of chemical compounds based on their molecular structure. In this vignette, we present the rQSAR package, which provides functions for variable selection and QSAR modeling using Multiple Linear Regression (MLR), Partial Least Squares (PLS), and Random Forest algorithms.

This package provides a novel bias-bound approach for non-parametric inference is introduced, focusing on both density and conditional expectation estimation. It constructs valid confidence intervals that account for the presence of a non-negligible bias and thus make it possible to perform inference with optimal mean squared error minimizing bandwidths. This package is based on Schennach (2020) <doi:10.1093/restud/rdz065>.

Computes the influence functions time series of the returns for the risk and performance measures as mentioned in Chen and Martin (2018) <https://www.ssrn.com/abstract=3085672>, as well as in Zhang et al. (2019) <https://www.ssrn.com/abstract=3415903>. Also evaluates estimators influence functions at a set of parameter values and plots them to display the shapes of the influence functions.

This package provides methods for randomization inference in group-randomized trials. Specifically, it can be used to analyze the treatment effect of stratified data with multiple clusters in each stratum with treatment given on cluster level. User may also input as many covariates as they want to fit the data. Methods are described by Dylan S Small et al., (2012) <doi:10.1198/016214507000000897>.

Defines operating characteristics of Bayesian Adaptive Trials considering a generalised linear model response via Monte Carlo simulations of Bayesian GLM fitted via integrated Laplace approximations (INLA).

Call the data wrappers for Bursa Metropolitan Municipality's Open Data Portal <https://acikyesil.bursa.bel.tr/>. This will return all datasets stored in different formats.

This package implements Cragg-Donald (1993) <doi:10.1017/S0266466600007519> and Stock and Yogo (2005) <doi:10.1017/CBO9780511614491.006> tests for weak instruments in R.

This package provides functions for the input/output and visualization of medical imaging data in the form of CIFTI files <https://www.nitrc.org/projects/cifti/>.

Provide functions for reading and writing CSVW - i.e. CSV tables and JSON metadata. The metadata helps interpret CSV by setting the types and variable names.

Reverse and model the effects of changing deposition rates on geological data and rates. Based on Hohmann (2018) <doi:10.13140/RG.2.2.23372.51841> .

Runs a genetic algorithm using the AlphaSimR machinery <doi:10.1093/g3journal/jkaa017> and the coalescent simulator MaCS <doi:10.1101/gr.083634.108>.

This package provides functions to access and retrieve metadata from the Finna API <https://api.finna.fi/>, which aggregates content from Finnish archives, libraries, and museums.

This package provides a micro-package for getting your IP address, either the local/internal or the public/external one. Currently only IPv4 addresses are supported.