Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.
Computational tools for meta-analysis of diagnostic accuracy test. Bootstrap-based computational methods of the confidence interval for AUC of summary ROC curve and some related AUC-based inference methods are available (Noma et al. (2021) <doi:10.1080/23737484.2021.1894408>).
This package contains 9 data objects supporting functionality and examples of the Bioconductor package DMRcate.
It provides functions to apply the deterministic tracking algorithm - DiST
(Wong et al 2016) <doi:10.1214/15-AOAS880> and to plot tractography results.