Build native desktop applications for Windows (with future support planned for macOS and Linux) using R and embedded webviews'. Provides a robust R6'-based event loop, asynchronous background task management via mirai and callr', and a native message bridge for seamless R'-to-user-interface communication without listening ports or network overhead. Allows R developers to create professional, standalone desktop tools with modern web-based user interfaces while maintaining a pure R backend.
Implementation of the Johnson Quantile-Parameterised Distribution in R. The Johnson Quantile-Parameterised Distribution (J-QPD) is a flexible distribution system that is parameterised by a symmetric percentile triplet of quantile values (typically the 10th-50th-90th) along with known support bounds for the distribution. The J-QPD system was developed by Hadlock and Bickel (2017) <doi:10.1287/deca.2016.0343>. This package implements the density, quantile, CDF and random number generator functions.
This package provides tools to analyze and visualize high-throughput metabolomics data acquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis.
This package implements an opinionated framework for building a production- ready Shiny application. Golem contains a series of tools like dependency management, version management, easy installation and deployment or documentation management.
This package provides users not only with a function to readily calculate the higher-order partial and semi-partial correlations but also with statistics and p-values of the correlation coefficients.
Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.
The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.
This package provides R bindings to the deterministic, rule-based formatter from arity'. Format R source text or individual files using a style based on the tidyverse R style guide.
Tests the parallel regression assumption wit the brant test by Brant (1990) <doi: 10.2307/2532457> for ordinal logit models generated with the function polr() from the package MASS'.
Generates bivariate residual plots with simulation polygons for any diagnostics and bivariate model from which functions to extract the desired diagnostics, simulate new data and refit the models are available.
Create, query, and modify causal graphs. caugi (Causal Graph Interface) is a causality-first, high performance graph package that provides a simple interface to build, structure, and examine causal relationships.
This package provides a convenient interface for making requests directly to the Civis Platform API <https://www.civisanalytics.com/platform>. Full documentation available here <https://civisanalytics.github.io/civis-r/>.
The cgAUC can calculate the AUC-type measure of Obuchowski(2006) when gold standard is continuous, and find the optimal linear combination of variables with respect to this measure.
Bayesian fit of a Dirichlet Process Mixture with hierarchical multivariate skew normal kernels and coarsened posteriors. For more information, see Gorsky, Chan and Ma (2024) <doi:10.1214/22-BA1356>.
Client for CKAN API (<https://ckan.org/>). Includes interface to CKAN APIs for search, list, show for packages, organizations, and resources. In addition, provides an interface to the datastore API.
Useful functions for various DDI (Data Documentation Initiative) related inputs and outputs. Converts data files to and from DDI, SPSS, Stata, SAS, R and Excel, including user declared missing values.
Bayesian inference algorithms based on the population-based "differential evolution" (DE) algorithm. Users can obtain posterior mode (MAP) estimates via DEMAP, posterior samples via DEMCMC, and variational approximations via DEVI.
Algorithm to handle with optimal subset selection for distributed local principal component analysis. The philosophy of the package is described in Guo G. (2020) <doi:10.1080/02331888.2020.1823979>.
This package contains utilities and functions for the cleaning, processing and management of patient level public health data for surveillance and analysis held by the UK Health Security Agency, UKHSA.
FastGit <https://doc.fastgit.org/> works like a mirror of GitHub to make significant acceleration. fgitR is a package to do git operation with FastGit automatically.
This package provides tools to calculate Mean Corpuscular Volume, Mean Corpuscular Hemoglobin, and Mean Corpuscular Hemoglobin Concentration, which are essential for assessing red blood cell health and diagnosing blood disorders.
Collection of utility functions used in the KEHRA project (see http://www.brunel.ac.uk/ife/britishcouncil). It refers to the multidimensional analysis of air pollution, weather and health data.
An interface to LuaJIT <https://luajit.org>, a just-in-time compiler for the Lua scripting language <https://www.lua.org>. Allows users to run Lua code from R'.
This package provides compact tools for missing-data analysis, including artificial amputation, chained single and multiple imputation, statistical and machine-learning-based imputation methods, diagnostic evaluation, and post-imputation pooling.