This package provides tools for estimating variance-mean dependence in count data from high-throughput genetic sequencing assays and for testing for differential expression based on a model using the negative binomial distribution.

This is a package for multivariate data analysis and graphical display of microarray data. Functions are included for supervised dimension reduction (between group analysis) and joint dimension reduction of two datasets (coinertia analysis).

This package provides a simple set of wrapper functions for data.table::fread() that allows subsetting or filtering rows and selecting columns of table-formatted files too large for the available RAM.

This package checks adherence to a given style, syntax errors and possible semantic issues. It supports on the fly checking of R code edited with RStudio IDE, Emacs and Vim.

This package provides a collection of efficient, vectorized algorithms for the creation and investigation of magic squares and hypercubes, including a variety of functions for the manipulation and analysis of arbitrarily dimensioned arrays.

This package provides tools to compute Gower's distance (or similarity) coefficient between records, and to compute the top-n matches between records. Core algorithms are executed in parallel on systems supporting OpenMP.

Compare complex R objects and reveal the key differences. This package was designed particularly for use in testing packages where being able to quickly isolate key differences makes understanding test failures much easier.

Many models contain tuning parameters (i.e. parameters that cannot be directly estimated from the data). These tools can be used to define objects for creating, simulating, or validating values for such parameters.

rpatool is a simple tool allowing you to create, modify and extract Ren'Py Archive files (.rpa/.rpi). Currently, only writing RPAv2/RPAv3 archives is supported.

This package provides the asynchronous RPC client-server framework and message specification for Rigetti Quantum Cloud Services (QCS). It implements an efficient transport protocol by using ZeroMQ (ZMQ) sockets and MessagePack (msgpack) serialization.

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Which day a week starts depends heavily on the either the local or professional context. This package is designed to be a lightweight solution to easily switching between week-based date definitions.

Easily processes batches of univariate or multivariate regression models. Returns results in a tidy format and generates visualization plots for straightforward interpretation (Wang, Shixiang, et al. (2025) <DOI:10.1002/mdr2.70028>).

Implementation of the Cluster Estimated Standard Errors (CESE) proposed in Jackson (2020) <DOI:10.1017/pan.2019.38> to compute clustered standard errors of linear coefficients in regression models with grouped data.

Allows Brownian motion, fractional Brownian motion, and integrated Ornstein-Uhlenbeck process components to be added to linear and non-linear mixed effects models using the structures and methods of the nlme package.

This package contains an implementation of the d-variable Hilbert Schmidt independence criterion and several hypothesis tests based on it, as described in Pfister et al. (2018) <doi:10.1111/rssb.12235>.

Improves the concept of multivariate range boxes, which is highly susceptible for outliers and does not consider the distribution of the data. The package uses dynamic range boxes to overcome these problems.

Emulates a Forth programming environment with added features to interface between R and Forth'. Implements most of the functionality described in the original "Starting Forth" textbook <https://www.forth.com/starting-forth/>.

Scans all directories and subdirectories of a path for code snippets, R scripts, R Markdown, PDF or text files containing a specific pattern. Files found can be copied to a new folder.

This package provides a collection of GIS (Geographic Information System) functions in R, created for use in Statistics Norway. The functions are primarily related to network analysis on the Norwegian road network.

This package provides access to Uber's H3 library for geospatial indexing via its JavaScript transpile h3-js <https://github.com/uber/h3-js> and V8 <https://github.com/jeroen/v8>.

Estimation, inference and forecasting using the Bayesian approach for multivariate threshold autoregressive (TAR) models in which the distribution used to describe the noise process belongs to the class of Gaussian variance mixtures.

This package provides tools that extend the functionality of the RODBC package to work with Microsoft SQL Server databases. Makes it easier to browse the database and examine individual tables and views.

Fits the MESSI, hard constraint, and unconstrained models in Boss et al. (2023) <doi:10.48550/arXiv.2306.17347> for mediation analyses with external summary-level information on the total effect.