To calculate the standard error of measurement (SEM) to assess the observer variability (inter- and intra-observer variation). The methods used in this package are referenced from Zoran B. PopoviÄ (2017) <doi:10.21037/cdt.2017.03.12>.

This package provides a collection of utility functions that facilitate looking up vector values from a lookup table, annotate values in at table for clearer viewing, and support a safer approach to vector sampling, sequence generation, and aggregation.

This package provides a part of precision agriculture is linked to the spectral image obtained from the cameras. With the image information of the agricultural experiment, the included functions facilitate the collection of spectral data associated with the experimental units. Some designs generated in R are linked to the images, which allows the use of the information of each pixel of the image in the experimental unit and the treatment. Tables and images are generated for the analysis of the precision agriculture experiment during the entire vegetative period of the crop.

This package provides a framework for the quantification and analysis of short genomic reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.

This package simplifies custom CSS styling of both shiny and rmarkdown via Bootstrap Sass. It supports both Bootstrap 3 and 4 as well as their various Bootswatch themes. An interactive widget is also provided for previewing themes in real time.

This package orders panels in scatterplot matrices and parallel coordinate displays by some merit index. It contains various indices of merit, ordering functions, and enhanced versions of pairs and parcoord which color panels according to their merit level.

This is a deprecated package for calculating pairwise multiple comparisons of mean rank sums. This package is superseded by the novel PMCMRplus package. The PMCMR package is no longer maintained, but kept for compatibility of dependent packages for some time.

This package provides tools for multiple imputation of missing data in multilevel modeling. It includes a user-friendly interface to the packages pan and jomo, and several functions for visualization, data management and the analysis of multiply imputed data sets.

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. EGSEA algorithm utilizes the analysis results of twelve prominent GSE algorithms in the literature to calculate collective significance scores for each gene set.

contains eight technical replicate data set and a three replicate dilution series of the MS Qual/Quant Quality Control Mix standard sample (Sigma-Aldrich, Buchs, Switzerland) measured on five different mass spectrometer platforms at the Functional Genomics Center Zurich.

scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.

Bayesian model and associated tools for generating estimates of total naloxone kit numbers distributed and used from naloxone kit orders data. Provides functions for generating simulated data of naloxone kit use and functions for generating samples from the posterior.

Running and comparing meta-analyses of data with hierarchical Bayesian models in Stan, including convenience functions for formatting data, plotting and pooling measures specific to meta-analysis. This implements many models from Meager (2019) <doi:10.1257/app.20170299>.

Bias- and Uncertainty-Corrected Sample Size. BUCSS implements a method of correcting for publication bias and uncertainty when planning sample sizes in a future study from an original study. See Anderson, Kelley, & Maxwell (2017; Psychological Science, 28, 1547-1562).

CemCO algorithm, a model-based (Gaussian) clustering algorithm that removes/minimizes the effects of undesirable covariates during the clustering process both in cluster centroids and in cluster covariance structures (Relvas C. & Fujita A., (2020) <arXiv:2004.02333>).

Efficiently create dummies of all factors and character vectors in a data frame. Support is included for learning the categories on one data set (e.g., a training set) and deploying them on another (e.g., a test set).

To calculate the sensitivity and specificity in the absence of gold standard using the Bayesian method. The Bayesian method can be referenced at Haiyan Gu and Qiguang Chen (1999) <doi:10.3969/j.issn.1002-3674.1999.04.004>.

Exploratory and descriptive analysis of event based data. Provides methods for describing and selecting process data, and for preparing event log data for process mining. Builds on the S3-class for event logs implemented in the package bupaR'.

This package provides a Humanitarian Data Exchange (HDX) theme, color palettes, and scales for ggplot2 to allow users to easily follow the HDX visual design guide, including convenience functions for for loading and using the Source Sans 3 font.

Generalization of supervised principal component regression (SPCR; Bair et al., 2006, <doi:10.1198/016214505000000628>) to support continuous, binary, and discrete variables as outcomes and predictors (inspired by the superpc R package <https://cran.r-project.org/package=superpc>).

Easy access to official spatial data sets of Brazil as sf objects in R. The package includes a wide range of geospatial data available at various geographic scales and for various years with harmonized attributes, projection and fixed topology.

This package provides methods to Get Water Attributes Visually in R ('gwavr'). This allows the user to point and click on areas within the United States and get back hydrological data, e.g. flowlines, catchments, basin boundaries, comids, etc.

Generalized Odds Rate Hazards (GORH) model is a flexible model of fitting survival data, including the Proportional Hazards (PH) model and the Proportional Odds (PO) Model as special cases. This package fit the GORH model with interval censored data.

Dati, scripts e funzioni per il libro "Ricerca sociale con R. Concetti e funzioni base per la ricerca sociale" (Datasets, scripts and functions to support the book "Ricerca sociale con R. Concetti e funzioni base per la ricerca sociale").