Cucumber is a tool for running automated tests written in plain language. Because they're written in plain language, they can be read by anyone on your team. Because they can be read by anyone, you can use them to help improve communication, collaboration and trust on your team.

This package lets you create in just a few lines of R code a nice user interface to modify the data or the graphical parameters of one or multiple interactive charts. It is useful to quickly explore visually some data or for package developers to generate user interfaces easy to maintain.

This is a package for saving matrices, arrays and similar objects into file artifacts, and loading them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

eval-in-repl provides a consistent ESS-like evaluation interface for various REPLs. In particular, it mimics ESS' C-RET binding, which sends a line or region to an appropriately configured shell. This package provides just the core of eval-in-repl---for the languages themselves, see their respective packages.

This package provides a quasiquoter for raw string literals, i.e. string literals that don't recognise the standard escape sequences. Basically, they make your code more readable by freeing you from the responsibility to escape backslashes. They are useful when working with regular expressions, DOS/Windows paths and markup languages (such as XML).

This module exports a single hash (%RE) that stores or generates commonly needed regular expressions. Patterns currently provided include: balanced parentheses and brackets, delimited text (with escapes), integers and floating-point numbers in any base (up to 36), comments in 44 languages, offensive language, lists of any pattern, IPv4 addresses, URIs, and Zip codes.

Flask-RESTX is an extension for Flask that adds support for quickly building REST APIs. Flask-RESTX encourages best practices with minimal setup. If you are familiar with Flask, Flask-RESTX should be easy to pick up. It provides a coherent collection of decorators and tools to describe your API and expose its documentation properly using Swagger.

This package provides YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order. It is a derivative of Kirill Simonov’s PyYAML 3.11. It supports YAML 1.2 and has round-trip loaders and dumpers. It supports comments. Block style and key ordering are kept, so you can diff the source.

This package provides YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order. It is a derivative of Kirill Simonov’s PyYAML 3.11. It supports YAML 1.2 and has round-trip loaders and dumpers. It supports comments. Block style and key ordering are kept, so you can diff the source.

Make acoustic cues to use with the R package ndl. The package implements functions used in the PLoS ONE paper "Words from spontaneous conversational speech can be recognized with human-like accuracy by an error-driven learning algorithm that discriminates between meanings straight from smart acoustic features, bypassing the phoneme as recognition unit." doi:10.1371/journal.pone.0174623

The package uses PStricks and pst-solides3d to draw three dimensional ribbons on a cylinder, torus, sphere, cone or paraboloid. The width of the ribbon, the number of turns, the colour of the outer and the inner surface of the ribbon may be set. In the case of circular and conical helices, one may also choose the number of ribbons.

The gem public_suffix is a domain name parser, written in Ruby, and based on the Public Suffix List. A public suffix is one under which Internet users can (or historically could) directly register names. Some examples of public suffixes are .com, .co.uk and pvt.k12.ma.us. The Public Suffix List is a list of all known public suffixes.

This package provides a number of useful hacks to solve common annoyances with the revtex4-1 package, and to define notation in common use within quantum information. In doing so, it imports and configures a number of commonly-available and used packages, and where reasonable, provides fallbacks. It also warns when users try to load packages which are known to be incompatible with revtex4-1.

Responsive design aims to display text and other design elements well on variety of outputs, including electronic devices or various paper sizes. This package tries to achieve similar results with LaTeX. The main aim is to support the output of multiple editions of one document with readable font sizes regardless of the physical size of the produced PDF, from smartphones or e-ink readers to printed A4 pages.

This is a LaTeX2e class for typesetting recipes. It is designed for typesetting one or two recipes per page, with dimensions of 5.5 x 8.5. The hyperlinked table of contents and page numbers make browsing recipes convenient, and the pages can be joined together or printed two per sheet to normal letterpaper easily. The size was chosen to work in half-page 3-ring binder cover sheets.

This package provides tools for creating detailed dataframes for common statistical approaches and tests. These include parametric, nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation analyses, contingency table analyses, and meta-analyses. The functions are pipe-friendly and provide a consistent syntax to work with tidy data. These dataframes additionally contain expressions with statistical details, and can be used in graphing packages. This package also forms the statistical processing backend for ggstatsplot.

This package contains a collection of symbols for typesetting electrical wiring diagrams for relay control systems. The symbols are meant to be in agreement with the international standard IEC-60617 which has been adopted worldwide, with perhaps the exception of the USA. It extends and modifies, when needed, the TikZ-library circuits.ee.IEC. A few non-standard symbols are also included mainly to be used in presentations, particularly with the beamer package.

High level functions to assist in annotation of (metabolomics) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m/z and retention times for annotation of LC-MS features given that respective reference values are available. In addition, the function provides high-level functions to simplify matching of LC-MS/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data.

Racket is a general-purpose programming language in the Scheme family, with a large set of libraries and a compiler based on Chez Scheme. Racket is also a platform for language-oriented programming, from small domain-specific languages to complete language implementations.

The main Racket distribution comes with many bundled packages, including the DrRacket IDE, libraries for GUI and web programming, and implementations of languages such as Typed Racket, R5RS and R6RS Scheme, Algol 60, and Datalog.

ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes developed in our lab.

Provides a set of udev rules to allow using Android devices with tools such as adb and fastboot without root privileges. This package is intended to be added as a rule to the udev-service-type in your operating-system configuration. Additionally, an adbusers group must be defined and your user added to it.

Simply installing this package will not have any effect. It is meant to be passed to the udev service.

DEComplexDisease is designed to find the DEGs for complex disease, which is characterized by the heterogeneous genomic expression profiles. Different from the established DEG analysis tools, it does not assume the patients of complex diseases to share the common DEGs. By applying a bi-clustering algorithm, DEComplexDisease finds the DEGs shared by as many patients. Applying the DEComplexDisease analysis results, users are possible to find the patients affected by the same mechanism based on the shared signatures.

This package provides a subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. It also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

CharacterSet is a C-extended Ruby library to work with sets of Unicode code points. It can read and write these sets in various formats and implements the stdlib Set interface for them. It also offers an alternate paradigm of String processing which grants much better performance than Regexp and String methods from the stdlib where applicable. Many parts can be used independently, e.g.:

• CharacterSet::Character

• CharacterSet::Parser

• CharacterSet::Writer

• RangeCompressor