MoleculeExperiment contains functions to create and work with objects from the new MoleculeExperiment class. We introduce this class for analysing molecule-based spatial transcriptomics data (e.g., Xenium by 10X, Cosmx SMI by Nanostring, and Merscope by Vizgen). This allows researchers to analyse spatial transcriptomics data at the molecule level, and to have standardised data formats accross vendors.

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

It allows network booting and uses the device-tree from the firmware, allowing the usage of overlays. It can act as an EFI firmware for the grub-efi-netboot-removable-bootloader. This is a common 64-bit build of U-Boot for all 64-bit capable Raspberry Pi variants.

This package provides a port of the matrixStats API for use with DelayedMatrix objects from the DelayedArray package. It contains high-performing functions operating on rows and columns of DelayedMatrix objects, e.g. colMedians, rowMedians, colRanks, rowRanks, colSds, and rowSds. Functions are optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

It allows network booting and uses the device-tree from the firmware, allowing the usage of overlays. It can act as an EFI firmware for the grub-efi-netboot-removable-bootloader. This is a 32-bit build of U-Boot.

This package only contains the file u-boot.bin.

This package provides some commands (in French) to perform calculations on small (2x2 or 3x3 or 4x4) linear systems, with xint or pyluatex:

• \DetMatrice or \DetMatricePY to display the determinant of a matrix;

• \MatriceInverse or \MatriceInversePY to display the inverse of a matrix;

• \SolutionSysteme or \SolutionSystemePY to display the solution of a linear system;

• …

Out-of-box, Citar provides default support for file-per-note bibliographic notes that are compatible with Org-Roam v2. This package integrates directly with the Org-Roam database, and provides the following additional features to Citar note support:

• multiple references per note

• multiple reference notes per file

• ability to query note citations by reference

• ``live'' updating of Citar UI for presence of notes

This library contains the Ruby extension that implements Protocol Buffers functionality in Ruby.

The Ruby extension makes use of generated Ruby code that defines message and enum types in a Ruby DSL. You may write definitions in this DSL directly, but we recommend using protoc's Ruby generation support with .proto files. The build process in this directory only installs the extension; you need to install protoc (in package ruby-grpc-tools) as well to have Ruby code generation functionality.

This is a collection of perl classes for reading and writing directed graphs in a variety of file formats. The graphs are represented in Perl using Jarkko Hietaniemi's Graph classes.

There are two base classes. Graph::Reader is the base class for classes which read a graph file and create an instance of the Graph class. Graph::Writer is the base class for classes which take an instance of the Graph class and write it out in a specific file format.

GNU Emacs is an extensible and highly customizable text editor. It is based on an Emacs Lisp interpreter with extensions for text editing. Emacs has been extended in essentially all areas of computing, giving rise to a vast array of packages supporting, e.g., email, IRC and XMPP messaging, spreadsheets, remote server editing, and much more. Emacs includes extensive documentation on all aspects of the system, from basic editing to writing large Lisp programs. It has full Unicode support for nearly all human languages.

The Internet Engineering Task Force (IETF) and the Internet Society (ISOC) publish various Internet-related protocols and specifications as "Request for Comments" (RFC) documents. The built-in Emacs module "ffap" (Find File at Point) has the ability to recognize names at point which look like "RFC1234" and "RFC-1234" and load the appropriate RFC from a remote server. However, it fails to recognize a name like "RFC 1234". This package enhances ffap so that it correctly finds RFCs even when a space appears before the number.

Given a time series or pseudo-times series of gene expression data, we might wish to know: Do the changes in gene expression in these data exhibit directionality? Are there turning points in this directionality. Do different subsets of the data move in different directions? This package uses spherical geometry to probe these sorts of questions. In particular, if we are looking at (say) the first n dimensions of the PCA of gene expression, directionality can be detected as the clustering of points on the (n-1)-dimensional sphere.

This r-acceptancesampling provides functionality for creating and evaluating acceptance sampling plans. Acceptance sampling is a methodology commonly used in quality control and improvement. International standards of acceptance sampling provide sampling plans for specific circumstances. The aim of this package is to provide an easy-to-use interface to visualize single, double or multiple sampling plans. In addition, methods have been provided to enable the user to assess sampling plans against pre-specified levels of performance, as measured by the probability of acceptance for a given level of quality in the lot.

Package xid is a globally unique id generator suited for web scale. Features:

• zize: 12 bytes (96 bits), smaller than UUID, larger than snowflake

• base32 hex encoded by default (20 chars when transported as printable string, still sortable)

• mon configured, you don't need set a unique machine and/or data center id

• k-ordered

• embedded time with 1 second precision

• unicity guaranteed for 16,777,216 (24 bits) unique ids per second and per host/process

• lock-free (i.e.: unlike UUIDv1 and v2)

Asciidoctor PDF is an extension for Asciidoctor that converts AsciiDoc documents to Portable Document Format (PDF) using the Prawn PDF library. It has features such as:

• Direct AsciiDoc to PDF conversion

• Configuration-driven theme (style and layout)

• Scalable Vector Graphics (SVG) support

• PDF document outline (i.e., bookmarks)

• Table of contents page(s)

• Document metadata (title, authors, subject, keywords, etc.)

• Internal cross reference links

• Syntax highlighting with Rouge, Pygments, or CodeRay

• Page numbering

• Customizable running content (header and footer)

• “Keep together” blocks (i.e., page breaks avoided in certain block content)

• Orphaned section titles avoided

• Autofit verbatim blocks (as permitted by base_font_size_min setting)

• Table border settings honored

• Font-based icons

• Custom TrueType (TTF) fonts

• Double-sided printing mode (margins alternate on recto and verso pages)

Port of arc90's readability project to ruby

This package provides a ruby gem for rendering JSON API documents.

Platform Design Info for Affymetrix Clariom_S_Rat_HT.

Affymetrix raex10 annotation data (chip raex10stprobeset) assembled using data from public repositories.

Platform Design Info for Affymetrix RaGene-1_1-st-v1.

Platform Design Info for Affymetrix RaGene-1_0-st-v1.

Raspberry Pi firmware binaries

Typing stubs for requests

This package provides a RuboCop plugin that can be used for code style checking of Capybara test files (RSpec, Cucumber, Minitest).

OmniAuth strategy for Twitter