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This package implements an automated binning of numeric variables and factors with respect to a dichotomous target variable. Two approaches are provided: An implementation of fine and coarse classing that merges granular classes and levels step by step. And a tree-like approach that iteratively segments the initial bins via binary splits. Both procedures merge, respectively split, bins based on similar weight of evidence (WOE) values and stop via an information value (IV) based criteria. The package can be used with single variables or an entire data frame. It provides flexible tools for exploring different binning solutions and for deploying them to (new) data.
This package implements various win ratio methodologies for composite endpoints of death and non-fatal events, including the (stratified) proportional win-fractions (PW) regression models (Mao and Wang, 2020 <doi:10.1111/biom.13382>), (stratified) two-sample tests with possibly recurrent nonfatal event, and sample size calculation for standard win ratio test (Mao et al., 2021 <doi:10.1111/biom.13501>).
This package provides functions for computing moments and coefficients related to the Beta-Wishart and Inverse Beta-Wishart distributions. It includes functions for calculating the expectation of matrix-valued functions of the Beta-Wishart distribution, coefficient matrices C_k and H_k, expectation of matrix-valued functions of the inverse Beta-Wishart distribution, and coefficient matrices \tildeC_k and \tildeH_k. For more details, refer Hillier and Kan (2024) <https://www-2.rotman.utoronto.ca/~kan/papers/wishmom.pdf>, "On the Expectations of Equivariant Matrix-valued Functions of Wishart and Inverse Wishart Matrices".
Takes screenshots of web pages, including Shiny applications and R Markdown documents. webshot2 uses headless Chrome or Chromium as the browser back-end.
This package provides a Stata-style `webuse()` function for importing named datasets from Stata's online collection.
Solves the horse race problem in both directions. Infers relative ability from win probabilities (or betting dividends) for contests whose entrants share a common performance distribution, with dead heats handled exactly, by the lattice fixed-point algorithm of Cotton (2021) <doi:10.1137/19M1276261>. Also computes all N win probabilities of a factor-structured Gaussian race (multinomial probit with low-rank-plus-diagonal covariance) in one shared-lattice pass of O(Q*N*L) operations, and inverts observed shares to abilities by a damped Newton method with analytic slopes. A dependency-free base-R port of the reference python package winning'. Performances are times: lowest wins.
This package implements Weighted-Average Least Squares model averaging for negative binomial regression models of Huynh (2024) <doi:10.48550/arXiv.2404.11324>, generalized linear models of De Luca, Magnus, Peracchi (2018) <doi:10.1016/j.jeconom.2017.12.007> and linear regression models of Magnus, Powell, Pruefer (2010) <doi:10.1016/j.jeconom.2009.07.004>, see also Magnus, De Luca (2016) <doi:10.1111/joes.12094>. Weighted-Average Least Squares for the linear regression model is based on the original MATLAB code by Magnus and De Luca <https://www.janmagnus.nl/items/WALS.pdf>, see also Kumar, Magnus (2013) <doi:10.1007/s13571-013-0060-9> and De Luca, Magnus (2011) <doi:10.1177/1536867X1201100402>.
Scrape lake metadata tables from Wikipedia <https://www.wikipedia.org/>.
This package implements a functional approximation of the four panel cointegration tests developed by Westerlund (2007) <doi:10.1111/j.1468-0084.2007.00477.x>. The tests are based on structural rather than residual dynamics and allow for heterogeneity in both the long-run cointegrating relationship and the short-run dynamics. The package includes logic for automated lag and lead selection via AIC/BIC, Bartlett kernel long-run variance estimation, and a bootstrap procedure to handle cross-sectional dependence. It also includes a bootstrapping distribution visualization function for diagnostic purposes.
Several analysis-related functions for the book entitled "Web-based Analysis without R in Your Computer"(written in Korean, ISBN 978-89-5566-185-9) by Keon-Woong Moon. The main function plot.htest() shows the distribution of statistic for the object of class htest'.
Analyzes and models data subject to sampling biases. Provides functions to estimate the density and cumulative distribution functions from biased samples of continuous distributions. Includes the estimators proposed by Bhattacharyya et al. (1988) <doi:10.1080/03610928808829825> and Jones (1991) <doi:10.2307/2337020> for density, and by Cox (2005, ISBN:052184939X) and Bose and Dutta (2022) <doi:10.1007/s00184-021-00824-3> for distribution, with different bandwidth selectors. Also includes a real length-biased dataset on shrub width from Muttlak (1988) <https://www.proquest.com/openview/3dd74592e623cdbcfa6176e85bd3d390/1?cbl=18750&diss=y&pq-origsite=gscholar>.
Fits the combination of Wavelet-GARCH model for time series forecasting using algorithm by Paul (2015) <doi:10.3233/MAS-150328>.
This package provides a collection of tools to fit and work with trophic Species Distribution Models. Trophic Species Distribution Models combine knowledge of trophic interactions with Bayesian structural equation models that model each species as a function of its prey (or predators) and environmental conditions. It exploits the topological ordering of the known trophic interaction network to predict species distribution in space and/or time, where the prey (or predator) distribution is unavailable. The method implemented by the package is described in Poggiato, Andréoletti, Pollock and Thuiller (2022) <doi:10.22541/au.166853394.45823739/v1>.
R clients to the Web of Science and InCites <https://clarivate.com/products/data-integration/> APIs, which allow you to programmatically download publication and citation data indexed in the Web of Science and InCites databases.
This package provides functions aiming to facilitate the analysis of the structure of animal acoustic signals in R'. warbleR makes use of the basic sound analysis tools from the packages tuneR and seewave', and offers new tools for exploring and quantifying acoustic signal structure. The package allows to organize and manipulate multiple sound files, create spectrograms of complete recordings or individual signals in different formats, run several measures of acoustic structure, and characterize different structural levels in acoustic signals (Araya-Salas et al 2016 <doi:10.1111/2041-210X.12624>).
Segments walking from accelerometry data using forest python module <https://github.com/onnela-lab/forest> from Yi (2025) <doi:10.2196/71375>, Verisense original from Rowlands (2022) <doi:10.1080/02640414.2022.2147134> and Verisense revised from Maylor (2022) <doi:10.3390/s22249984>, and Step Detection Threshold (SDT) from Ducharme (2021) <doi:10.1123/jmpb.2021-0011> methods.
Descriptive statistics for large data tend to be low resolution on the tails. Whisker Odds generate a table of descriptive statistics for large data. This is the same as letter-values, but with an alternative naming of depths which allow for depths beyond 26. For a reference to letter-values see Heike Hofmann and Hadley Wickham and Karen Kafadar (2017) <doi:10.1080/10618600.2017.1305277>.
Predicts individual race/ethnicity using surname, first name, middle name, geolocation, and other attributes, such as gender and age. The method utilizes Bayes Rule (with optional measurement error correction) to compute the posterior probability of each racial category for any given individual. The package implements methods described in Imai and Khanna (2016) "Improving Ecological Inference by Predicting Individual Ethnicity from Voter Registration Records" Political Analysis <DOI:10.1093/pan/mpw001> and Imai, Olivella, and Rosenman (2022) "Addressing census data problems in race imputation via fully Bayesian Improved Surname Geocoding and name supplements" <DOI:10.1126/sciadv.adc9824>. The package also incorporates the data described in Rosenman, Olivella, and Imai (2023) "Race and ethnicity data for first, middle, and surnames" <DOI:10.1038/s41597-023-02202-2>.
This package provides tools for a wavelet-based approach to analyzing spatial synchrony, principally in ecological data. Some tools will be useful for studying community synchrony. See, for instance, Sheppard et al (2016) <doi: 10.1038/NCLIMATE2991>, Sheppard et al (2017) <doi: 10.1051/epjnbp/2017000>, Sheppard et al (2019) <doi: 10.1371/journal.pcbi.1006744>.
Taxonomic information from Wikipedia', Wikicommons', Wikispecies', and Wikidata'. Functions included for getting taxonomic information from each of the sources just listed, as well performing taxonomic search.
Top-Down mass spectrometry aims to identify entire proteins as well as their (post-translational) modifications or ions bound (eg Chen et al (2018) <doi:10.1021/acs.analchem.7b04747>). The pattern of internal fragments (Haverland et al (2017) <doi:10.1007/s13361-017-1635-x>) may reveal important information about the original structure of the proteins studied (Skinner et al (2018) <doi:10.1038/nchembio.2515> and Li et al (2018) <doi:10.1038/nchem.2908>). However, the number of possible internal fragments gets huge with longer proteins and subsequent identification of internal fragments remains challenging, in particular since the the accuracy of measurements with current mass spectrometers represents a limiting factor. This package attempts to deal with the complexity of internal fragments and allows identification of terminal and internal fragments from deconvoluted mass-spectrometry data.
Search and download data from over 40 databases hosted by the World Bank, including the World Development Indicators ('WDI'), International Debt Statistics, Doing Business, Human Capital Index, and Sub-national Poverty indicators.
This package provides scalogram based wavelet tools for time series analysis: wavelet power spectrum, scalogram, windowed scalogram, windowed scalogram difference (see Bolos et al. (2017) <doi:10.1016/j.amc.2017.05.046>), scale index and windowed scale index (Benitez et al. (2010) <doi:10.1016/j.camwa.2010.05.010>).
Evaluation of alternatives based on multiple criteria using weighted technique for Order preference by similarity to an ideal solution method. Reference: Hwang CL. (1981, ISBN:978-3-540-10558-9).