Demographic data on the United States at the county and state levels spanning multiple years.

This package provides tools to build CDISC compliant data sets and check for CDISC compliance.

This package provides a library for rolling windows operations. The package enables full control over the window length, window lag, and time indices. With a runner one can apply any R function on rolling windows. The package eases work with equally and unequally spaced time series.

This package provides the random ferns classifier by Ozuysal, Calonder, Lepetit and Fua (2009) <doi:10.1109/TPAMI.2009.23>, modified for generic and multi-label classification and featuring OOB error approximation and importance measure as introduced in Kursa (2014) <doi:10.18637/jss.v061.i10>.

Useful tools for determining whether two samples are from the same distribution. Utilizes a robust method to address the problematic structure of the similarity graph constructed from high-dimensional data. The method is provided in Yichuan Bai and Lynna Chu (2023) <arXiv:2307.12325>.

R-level and C++-level functionality to generate random deviates from and calculate moments of a Truncated Normal distribution using the algorithm of Robert (1995) <DOI:10.1007/BF00143942>. In addition to RNG, functions for calculating moments, densities, and entropies are provided at both levels.

Interface to SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package rolog instead. The purpose of this package is to provide the Prolog runtime on systems that do not have a software installation of SWI'-'Prolog'.

This package provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.

Reference-based multiple imputation of ordinal and binary responses under Bayesian framework, as described in Wang and Liu (2022) <arXiv:2203.02771>. Methods for missing-not-at-random include Jump-to-Reference (J2R), Copy Reference (CR), and Delta Adjustment which can generate tipping point analysis.

This package provides functions to conduct hypothesis tests and derive confidence intervals for quantiles, linear combinations of quantiles, ratios of dependent linear combinations and differences and ratios of all of the above for comparisons between independent samples. Additionally, quantile-based measures of inequality are also considered.

Branching process simulation model of infectious disease transmission with flexible parameterisation of epidemiology and targeted interventions, including isolation, contact tracing and quarantine, to reduce transmission, together with functions to evaluate outbreak control. Introduced in Hellewell et al. (2020) <doi:10.1016/S2214-109X(20)30074-7>.

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

This package provides negative binomial models for two-group comparisons and regression inferences from RNA-sequencing data.

This package provides two convenience functions assert() and test_pkg() to facilitate testing R packages.

This package provides a collection of templates to author preregistration documents for scientific studies in PDF format.

Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.

This package provides full screen and partial loading screens for Shiny with spinners, progress bars, and notifications.

This package provides a multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution.

This pure ruby library provides spawn() which is almost perfectly compatible with ruby 1.9's.

This library provides methods to read Adobe Font Metrics (afm) files and use the data therein.

This package provides a job queue that uses PostgreSQL for storing jobs and locking between worker processes.

This package provides simple utility functions that are shared across several packages maintained by the Tanay lab.

Command-line tool and C library for reading files from popular stats packages like SAS, Stata and SPSS.

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.