CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples, indentify SNPs tagging copy number variants and detect copy number polymorphic genomic regions.

This package implements computationally-efficient construction of confidence intervals from permutation or randomization tests for simple differences in means, based on Nguyen (2009) <doi:10.15760/etd.7798>.

Generates the calibration simplex (a generalization of the reliability diagram) for three-category probability forecasts, as proposed by Wilks (2013) <doi:10.1175/WAF-D-13-00027.1>.

An implementation of the differentiable lasso (dlasso) and SCAD (dSCAD) using iterative ridge algorithm. This package allows selecting the tuning parameter by AIC, BIC, GIC and GIC.

This package provides functions for estimating catalytic constant and Michaelis-Menten constant for enzyme kinetics model using Metropolis-Hasting algorithm within Gibbs sampler based on the Bayesian framework.

This package provides a collection of epidemic/network-related tools. Simulates transmission of diseases through contact networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data.

Estimate the of fractal dimension of a black area in 2D and 3D (slices) images using the box-counting method. See Klinkenberg B. (1994) <doi:10.1007/BF02065874>.

Formula 1 pit stop data. The package provides information on teams and drivers across seasons (2019 or higher). It also includes a function to visualize pit stop performance.

Set of routines for making map projections (forward and inverse), topographic maps, perspective plots, geological maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.

Used to create dynamic, interactive D3.js based parallel coordinates and principal component plots in R'. The plots make visualizing k-means or other clusters simple and informative.

This package provides bindings to the Leaflet.glify JavaScript library which extends the leaflet JavaScript library to render large data in the browser using WebGl'.

This package provides a set of functions for weather and climate data manipulation, and other helper functions, to support dynamic ecological modeling, particularly crop and crop disease modeling.

This package contains several functions for statistical data analysis; e.g. for sample size and power calculations, computation of confidence intervals and tests, and generation of similarity matrices.

Stacking arrays according to dimension names, subset-aware splitting and mapping of functions, intersecting along arbitrary dimensions, converting to and from data.frames, and many other helper functions.

Represent network or igraph objects whose vertices can be represented by features in an sf object as a network graph surmising a sf plot. Fits into ggplot2 grammar.

An implementation of a Neural Network using the Levenberg-Marquardt optimization from minpack.lm', ideal for small datasets. For more details see Moré (1978) <doi:10.1007/BFb0067700>.

Games that can be played in the R console. Includes coin flip, hangman, jumble, magic 8 ball, poker, rock paper scissors, shut the box, spelling bee, and 2048.

Presentation of a new goodness-of-fit normality test based on the Lilliefors method. For details on this method see: Sulewski (2019) <doi:10.1080/03610918.2019.1664580>.

Bayesian hierarchical methods for pathway analysis of genomewide association data: Normal/Bayes factors and Sparse Normal/Adaptive lasso. The Frequentist Fisher's product method is included as well.

This package implements the smooth LASSO estimator for the function-on-function linear regression model described in Centofanti et al. (2022) <doi:10.1016/j.csda.2022.107556>.

Gives design points from a sequential full factorial-based Latin hypercube design, as described in Duan, Ankenman, Sanchez, and Sanchez (2015, Technometrics, <doi:10.1080/00401706.2015.1108233>).

Evolutionary reconstruction based on substitutions and insertion-deletion (indels) analyses in a distance-based framework as described in Muñoz-Pajares (2013) <doi:10.1111/2041-210X.12118>.

Tree Ring Analysis of Disturbance Events in R (TRADER) package provides functions for disturbance reconstruction from tree-ring data, e.g. boundary line, absolute increase, growth averaging methods.

This package provides functions for interacting directly with the Taiwan Economic Journal API to offer data in R. For more information go to <https://api.tej.com.tw>.