Optimizing regular numeric problems in optically stimulated luminescence dating, such as: equivalent dose calculation, dose rate determination, growth curve fitting, decay curve decomposition, statistical age model optimization, and statistical plot visualization.

S4 class object for creating and managing group sequential designs. It calculates the efficacy and futility boundaries at each look. It allows modifying the design and tracking the design update history.

Extension of the snow package supporting fault tolerant and reproducible applications, as well as supporting easy-to-use parallel programming - only one function is needed. Dynamic cluster size is also available.

This package implements the sparse clustering methods of Witten and Tibshirani (2010): "A framework for feature selection in clustering"; published in Journal of the American Statistical Association 105(490): 713-726.

Automatically calculate direct, indirect, and total effects for piecewise structural equation models, comprising lists of fitted models representing structured equations (Lefcheck, 2016 <doi:10/f8s8rb>). Confidence intervals are provided via bootstrapping.

Dimensionality reduction (DR) is widely used in many domain for analyzing and visualizing high-dimensional data. tidydr provides uniform output and is compatible with multiple methods, including prcomp', mds', Rtsne'. etc.

Download TIGER/Line shapefiles from the United States Census Bureau (<https://www.census.gov/geographies/mapping-files/time-series/geo/tiger-line-file.html>) and load into R as sf objects.

This package provides a set of general functions that I have used in various projects and other R packages. Miscellaneous operations on data frames, matrices and vectors, ROC and PR statistics.

Inference methods for state-space models, relying on the Kalman Filter or on Viking (Variational Bayesian VarIance tracKING). See J. de Vilmarest (2022) <https://theses.hal.science/tel-03716104/>.

This package implements inferential and graphic procedures for the semiparametric proportional means regression of weighted composite endpoint of recurrent event and death (Mao and Lin, 2016, <doi:10.1093/biostatistics/kxv050>).

This is a collection of some useful functions when dealing with text data. Currently it only contains a very efficient function of decoding HTML entities in character vectors by Rcpp routine.

Rserve acts as a socket server (TCP/IP or local sockets) which allows binary requests to be sent to R. Every connection has a separate workspace and working directory. Client-side implementations are available for popular languages such as C/C++ and Java, allowing any application to use facilities of R without the need of linking to R code. Rserve supports remote connection, user authentication and file transfer. A simple R client is included in this package as well.

Implementation of a variety of methods to compute the robustness of ecological interaction networks with binary interactions as described in <doi:10.1002/env.2709>. In particular, using the Stochastic Block Model and its bipartite counterpart, the Latent Block Model to put a parametric model on the network, allows the comparison of the robustness of networks differing in species richness and number of interactions. It also deals with networks that are partially sampled and/or with missing values.

This is a meta-package designed to support the installation of Rmosek (>= 6.0) and bring the optimization facilities of MOSEK (>= 6.0) to the R-language. The interface supports large-scale optimization of many kinds: Mixed-integer and continuous linear, second-order cone, exponential cone and power cone optimization, as well as continuous semidefinite optimization. Rmosek and the R-language are open-source projects. MOSEK is a proprietary product, but unrestricted trial and academic licenses are available.

RSS Guard is a simple RSS/ATOM feed reader for Windows, Linux, BSD, OS/2 or macOS which can work with RSS/ATOM/JSON/iCalendar/Sitemap feeds as well as many online feed services.

This package provides tools to create interactive tutorials using R Markdown. Use a combination of narrative, figures, videos, exercises, and quizzes to create self-paced tutorials for learning about R and R packages.

This package provides routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.

rg is an Emacs search package based on the ripgrep command line tool. It allows one to interactively search based on the editing context then refine or modify the search results.

Repetitive Strain Injury is an illness which can occur as a result of working with a mouse and keyboard. This utility can be used to remind you to take a break now and then.

ryzenadj is an utility to adjust power management settings for AMD Ryzen mobile processors. You will need to ensure it can access /dev/mem, for instance by using the "iomem=relaxed" kernel argument.

This package provides a fast and intuitive batch effect removal tool for single-cell data. BBKNN is originally used in the scanpy python package, and now can be used with Seurat seamlessly.

This package provides a way to reduce model objects to necessary parts, making them easier to work with, store, share and simulate multiple values for new responses while allowing for parameter uncertainty.

The Bloom Detecting Algorithm enables the detection of blooms within a time series of species abundance and extracts 22 phenological variables. For details, see Karasiewicz et al. (2022) <doi:10.3390/jmse10020174>.

R client for Bender Hyperparameters optimizer : <https://bender.dreem.com> The R client allows you to communicate with the Bender API and therefore submit some new trials within your R script itself.