This package provides bindings to libsodium: a library for encryption, decryption, signatures, password hashing and more. Sodium uses curve25519, a Diffie-Hellman function by Daniel Bernstein, which has become very popular after it was discovered that the NSA had backdoored Dual EC DRBG.

This package implements the Python leidenalg module to be called in R. It enables clustering using the Leiden algorithm for partitioning a graph into communities. See also Traag et al (2018) "From Louvain to Leiden: guaranteeing well-connected communities." <arXiv:1810.08473>.

This package provides miscellaneous functions for SciViews or general use, including tools to manage a temporary environment attached to the search path for temporary variables you do not want to save() or load(); test the current platform; showing progress bars, etc.

Quality Ensured Demonstrations (QED) is a test framework for Test Driven Development (TDD) and Behaviour Driven Development (BDD) utilizing Literate Programming techniques. QED sits somewhere between lower-level testing tools like Test::Unit and requirement specifications systems like Cucumber.

This package enables regression and classification on high-dimensional data with different relative strengths of penalization for different feature groups, such as different assays or omic types. The optimal relative strengths are chosen adaptively. Optimisation is performed using a variational Bayes approach.

Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.

This package provides functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.

simPIC is a package for simulating single-cell ATAC-seq count data. It provides a user-friendly, well documented interface for data simulation. Functions are provided for parameter estimation, realistic scATAC-seq data simulation, and comparing real and simulated datasets.

High-throughput single-cell measurements of DNA methylation allows studying inter-cellular epigenetic heterogeneity, but this task faces the challenges of sparsity and noise. We present vmrseq, a statistical method that overcomes these challenges and identifies variably methylated regions accurately and robustly.

The aligned rank transform for nonparametric factorial ANOVAs as described by Wobbrock, Findlater, Gergle, and Higgins (2011) <doi:10.1145/1978942.1978963>. Also supports aligned rank transform contrasts as described by Elkin, Kay, Higgins, and Wobbrock (2021) <doi:10.1145/3472749.3474784>.

Interface to Altair <https://altair-viz.github.io>, which itself is a Python interface to Vega-Lite <https://vega.github.io/vega-lite/>. This package uses the Reticulate framework <https://rstudio.github.io/reticulate/> to manage the interface between R and Python'.

Unsupervised clustering protocol for large scale structured data, based on a low dimensional representation of the data. Dimensionality reduction is performed using a parallelized implementation of the t-Stochastic Neighboring Embedding algorithm (Garriga J. and Bartumeus F. (2018), <arXiv:1812.09869>).

This package provides an efficient and robust implementation for estimating marginal Hazard Ratio (HR) and Restricted Mean Survival Time (RMST) with covariate adjustment using Daniel et al. (2021) <doi:10.1002/bimj.201900297> and Karrison et al. (2018) <doi:10.1177/1740774518759281>.

Conditional moments test, as proposed by Newey (1985) <doi:10.2307/1911011 > and Tauchen (1985) <doi:10.1016/0304-4076(85)90149-6>, useful to detect specification violations for models estimated by maximum likelihood. Methods for probit and tobit models are provided.

Comparative analysis of continuous traits influencing discrete states, and utility tools to facilitate comparative analyses. Implementations of ABBA/BABA type statistics to test for introgression in genomic data. Wright-Fisher, phylogenetic tree, and statistical distribution Shiny interactive simulations for use in teaching.

Fits probability distributions to data and plugs into the probaverse suite of R packages so distribution objects are ready for further manipulation and evaluation. Supports methods such as maximum likelihood and L-moments, and provides diagnostics including empirical ranking and quantile score.

New and faster implementations for quantile quantile plots. The package also includes a function to prune data for quantile quantile plots. This can drastically reduce the running time for large samples, for 100 million samples, you can expect a factor 80X speedup.

Gitea is a community managed, lightweight code hosting solution were projects and their respective git repositories can be managed <https://gitea.io>. This package gives an interface to the Gitea API to access and manage repositories, issues and organizations directly in R.

Simple package to download Google Sheets using just the sharing link. Spreadsheets can be downloaded as a data frame, or as plain text to parse manually. Google Sheets is the new name for Google Docs Spreadsheets <https://www.google.com/sheets/about>.

Implement a multivariate analysis of the impact of items to identify a bias in the questionnaire validation of Likert-type scale variables. The items requires considering a null value (category doesn't have tendency). Offering frequency, importance and impact of the items.

The digits of the old version (before 2000 year) of Chinese ID Card Number is 15, this package aims to update to the current version of 18 digits. Besides, this package can help check whether the given ID is right or not.

This package provides functions to search, retrieve, apply and update classification standards and code lists using Statistics Norway's API <https://www.ssb.no/klass> from the system KLASS'. Retrieves classifications by date with options to choose language, hierarchical level and formatting.

Connect to the Less Annoying CRM API with ease to get your crm data in a clean and tidy format. Less Annoying CRM is a simple CRM built for small businesses, more information is available on their website <https://www.lessannoyingcrm.com/>.

Allele frequency databases for 50 forensic short tandem repeat (STR) markers, covering Norway and several broader regional populations: Europe, Africa, South America, West Asia, Middle Asia, and East Asia. Developed and maintained for use at the Department of Forensic Sciences, Oslo, Norway.