This package contains a selection of color palettes and ggplot2 themes designed by the package author.

This package provides functions to estimate survival and a treatment effect using a landmark estimation approach.

This package provides a set of functions to obtain modified score test for generalized linear models.

Nonparametric maximum likelihood estimation or Gaussian quadrature for overdispersed generalized linear models and variance component models.

The implementation of Markov Model Multiple Imputation with the application to COVID-19 scale, NIAID OS.

Several Oceanographic data sets are provided for use by the oce package and for other purposes.

This provides utilities for creating classed error and warning conditions based on where the error originated.

Drop-in replacements for standard base graphics functions. The replacements are prettier versions of the originals.

Estimates unsupervised outlier probabilities for multivariate numeric data with many observations from a nonparametric outlier statistic.

Gene-level variant association tests with disease status for pedigree data: kernel and burden association statistics.

This package provides a group of functions to scrape data from different websites, for academic purposes.

Calculates (unconditional) post-selection confidence intervals and p-values for the coefficients of (generalized) linear models.

Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.

This package provides a set of functions for generating SPSS syntax files from the R environment.

Several different sigmoid functions are implemented, including a wrapper function, SoftMax preprocessing and inverse functions.

rocSOLVER is a work-in-progress implementation of a subset of LAPACK functionality on the ROCm platform.

Helps fisheries scientists collect measurements from calcified structures and back-calculate estimated lengths at previous ages using standard procedures and models. This is intended to replace much of the functionality provided by the now out-dated fishBC software (<https://fisheries.org/bookstore/all-titles/software/70317/>).

Kiefer-Wolfowitz maximum likelihood estimation for mixture models and some other density estimation and regression methods based on convex optimization. See Koenker and Gu (2017) REBayes: An R Package for Empirical Bayes Mixture Methods, Journal of Statistical Software, 82, 1--26, <DOI:10.18637/jss.v082.i08>.

Wraps tiny_obj_loader C++ library for reading the Wavefront OBJ 3D file format including both mesh objects and materials files. The resultant R objects are either structured to match the tiny_obj_loader internal data representation or in a form directly compatible with the rgl package.

The use of proxies is required in certain network environments. Despite the power of system level software, it is still inconvenient to switch proxy networks at random in R's console. This package is designed to provide one-click switching between proxy and non-proxy states.

Designed to be compatible with the R package DBI (Database Interface) when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>. To do this Python Boto3 Software Development Kit ('SDK') <https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.

Computes linear Bayesian spectral estimates from multirate data for second-order stationary time series. Provides credible intervals and methods for plotting various spectral estimates. Please see the paper `Should we sample a time series more frequently? (doi below) for a full description of and motivation for the methodology.

Makes documents containing plots and tables from a table of R codes. Can make "HTML", "pdf('LaTex')", "docx('MS Word')" and "pptx('MS Powerpoint')" documents with or without R code. In the package, modularized shiny app codes are provided. These modules are intended for reuse across applications.

This package provides functions that are needed by many other packages on Bioconductor or which replace R functions.