_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


python-position-tools 0.2.2
Propagated dependencies: python-numpy@2.3.1 python-scipy@1.16.3 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/LorenFrankLab/position_tools
Licenses: Expat
Build system: pyproject
Synopsis: Tools for calculating smoothed 2D position, speed, head direction
Description:

This package provides tools for calculating smoothed 2D position, speed, head direction.

python-pyriemann 0.10
Propagated dependencies: python-joblib@1.5.2 python-matplotlib@3.10.8 python-numpy@2.3.1 python-scikit-learn@1.7.2 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://pyriemann.readthedocs.io
Licenses: Modified BSD
Build system: pyproject
Synopsis: Machine learning for multivariate data with Riemannian geometry
Description:

pyRiemann is a Python machine learning package based on scikit-learn API. It provides a high-level interface for processing and classification of real (resp. complex)-valued multivariate data through the Riemannian geometry of symmetric (resp. Hermitian) positive definite (SPD) (resp. HPD) matrices.

spikeinterface-gui 0.12.0
Propagated dependencies: python-markdown@3.10 python-pyqtgraph@0.13.7 python-pyside-6@6.9.2 python-spikeinterface@0.103.2
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://spikeinterface-gui.readthedocs.io/
Licenses: Expat
Build system: pyproject
Synopsis: GUI for spikeinterface objects
Description:

This package provides a cross-platform interactive viewer to inspect the final results and quality of any spike sorter supported by spikeinterface.

python-mne-lsl 1.14.0
Dependencies: liblsl@1.17.7
Propagated dependencies: python-click@8.3.1 python-mne@1.11.0 python-numpy@2.3.1 python-packaging@25.0 python-pooch@1.8.1 python-psutil@7.2.2 python-pyqtgraph@0.13.7 python-qtpy@2.4.3 python-scipy@1.16.3 python-tomli@2.2.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-lsl
Licenses: Modified BSD
Build system: pyproject
Synopsis: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices
Description:

MNE-LSL (Documentation website) provides a real-time brain signal streaming framework. MNE-LSL contains an improved python-binding for the Lab Streaming Layer C++ library, mne_lsl.lsl, replacing pylsl. This low-level binding is used in high-level objects to interact with LSL streams.

python-mne-connectivity 0.7
Propagated dependencies: python-h5netcdf@1.3.0 python-joblib@1.5.2 python-mne@1.11.0 python-netcdf4@1.7.2 python-numpy@2.3.1 python-pandas@2.3.3 python-scipy@1.16.3 python-tqdm@4.67.1 python-xarray@2025.12.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-connectivity
Licenses: Modified BSD
Build system: pyproject
Synopsis: Connectivity data analysis with MNE
Description:

MNE-Connectivity is an open-source Python package for connectivity and related measures of MEG, EEG, or iEEG data built on top of the MNE-Python API. It includes modules for data input/output, visualization, common connectivity analysis, and post-hoc statistics and processing.

python-curryreader 0.1.2
Propagated dependencies: python-matplotlib@3.10.8 python-numpy@2.3.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/mne-tools/curry-python-reader
Licenses: Modified BSD
Build system: pyproject
Synopsis: File reader for Compumedics Neuroscan data formats
Description:

This is an open-source tool which allows to load CURRY data into Python. It supports: raw float (.cdt), ascii (.cdt), legacy raw float (.dat) and legacy ascii (.dat).

python-nwbinspector 0.6.5
Propagated dependencies: python-aiohttp@3.11.18 python-click@8.3.1 python-fsspec@2026.1.0 python-hdmf-zarr@0.12.0 python-isodate@0.7.2 python-jsonschema@4.23.0 python-natsort@8.4.0 python-packaging@25.0 python-pynwb@3.1.3 python-pyyaml@6.0.2 python-requests@2.32.5 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://nwbinspector.readthedocs.io/
Licenses: Modified BSD
Build system: pyproject
Synopsis: Inspect NWB files for compliance with NWB Best Practices
Description:

This inspector is meant as a companion to the PyNWB validator, which checks for strict schema compliance. This tool attempts to apply some common sense to find components of the file that are technically compliant, but possibly incorrect, suboptimal in their representation, or deviate from best practices.

python-mne-bids 0.18.0
Propagated dependencies: python-curryreader@0.1.2 python-defusedxml@0.7.1-0.c744588 python-edfio@0.4.10 python-eeglabio@0.1.2 python-filelock@3.16.1 python-h5py@3.15.1 python-matplotlib@3.10.8 python-mne@1.11.0 python-nibabel@5.3.2 python-numpy@2.3.1 python-pandas@2.3.3 python-pybv@0.7.6 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mne.tools/mne-bids
Licenses: Modified BSD
Build system: pyproject
Synopsis: Organize MEG, EEG, and iEEG data according to the BIDS specification
Description:

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

python-picard 0.8.1
Propagated dependencies: python-numpy@2.3.1 python-scikit-learn@1.7.2 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://mind-inria.github.io/picard
Licenses: Modified BSD
Build system: pyproject
Synopsis: Preconditoned ICA for Real Data
Description:

Picard provides Python/Octave/MATLAB code for the preconditionned ICA for real data.

python-pybvrf 0.1.4
Propagated dependencies: python-jsonschema@4.23.0 python-numpy@2.3.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/cbrnr/pybvrf
Licenses: Modified BSD
Build system: pyproject
Synopsis: Work with BrainVision Recording Format (BVRF) files in Python
Description:

PyBVRF is a Python package for working with BVRF files.

The package includes the following features:

  • Support for multi-participant recordings

  • Seamless integration with MNE-Python

  • Convenient access to metadata (including the original YAML header)

  • Support for markers and impedance data

A BVRF recording consists of multiple files which are expected to be available in the same directory. The required files are:

  • <fname>.bvrh (header file)

  • <fname>.bvrd (data file)

  • <fname>.bvrm (marker file)

Optionally, <fname>.bvri (impedance file) may also be present.

python-bioread 2025.05.02
Propagated dependencies: python-docopt@0.6.2 python-h5py@3.15.1 python-numpy@2.3.1 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/uwmadison-chm/bioread
Licenses: Expat
Build system: pyproject
Synopsis: Utilities to read BIOPAC AcqKnowledge files
Description:

This package provides utilities for reading the files produced by BIOPAC's AcqKnowledge software.

python-mne-denoise 0.0.1
Propagated dependencies: python-matplotlib@3.10.8 python-mne@1.11.0 python-numpy@2.3.1 python-scikit-learn@1.7.2 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/mne-tools/mne-denoise
Licenses: Modified BSD
Build system: pyproject
Synopsis: Advanced denoising algorithms for M/EEG data in MNE-Python
Description:

mne-denoise provides powerful signal denoising techniques for the MNE-Python ecosystem, including Denoising Source Separation (DSS) and ZapLine algorithms. These methods excel at extracting signals of interest by exploiting data structure rather than just variance.

python-mffpy 0.10.0
Propagated dependencies: python-deprecated@1.3.1 python-lxml@6.0.2 python-numpy@2.3.1 python-pytz@2025.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/BEL-Public/mffpy
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Reader and Writer for Philips' MFF file format
Description:

mffpy is a lean reader for EGI's MFF file format. These files are directories containing several files of mostly xml files, but also binary files.

python-nwb2bids 0.8.0
Propagated dependencies: python-pandas@2.3.3 python-pydantic@2.12.5 python-pynwb@3.1.3 python-rich-click@1.9.7 python-ruamel.yaml@0.18.14 python-typing-extensions@4.15.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://nwb2bids.readthedocs.io/
Licenses: Expat
Build system: pyproject
Synopsis: Reorganize NWB files into a BIDS directory layout
Description:

nwb2bids reorganizes NWB files into a BIDS directory layout.

Features:

  • Automatically renames NWB files and their directories to conform to BIDS conventions.

  • Extracts relevant metadata from NWB files to populate BIDS sidecar TSV & JSON files.

  • Currently supports BEP32 (micro-electrode electrophysiology) data types, such as extracellular (ecephys) and intracellular (icephys) electrophysiology, as well as associated behavioral events.

python-mne-ari 0.1.2-1.3c78a18
Propagated dependencies: python-mne@1.11.0 python-numpy@2.3.1 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/john-veillette/mne-ari
Licenses: Modified BSD
Build system: pyproject
Synopsis: All-Resolutions Inference for M/EEG
Description:

This package implements both parametric and permutation-based ARI, and is meant to be compatible with the MNE-Python ecosystem.

python-fooof 1.1.1
Propagated dependencies: python-matplotlib@3.10.8 python-numpy@2.3.1 python-pandas@2.3.3 python-scipy@1.16.3 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/fooof-tools/fooof
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Fitting oscillations & one over f (FOOOF)
Description:

Fast, efficient, and physiologically-informed tool to parameterize neural power spectra

python-pycrostates 0.6.1
Propagated dependencies: python-decorator@5.2.1 python-jinja2@3.1.2 python-joblib@1.5.2 python-matplotlib@3.10.8 python-mne@1.11.0 python-numpy@2.3.1 python-packaging@25.0 python-pooch@1.8.1 python-psutil@7.2.2 python-scikit-learn@1.7.2 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://pycrostates.readthedocs.io
Licenses: Modified BSD
Build system: pyproject
Synopsis: Python package for EEG microstate segmentation
Description:

This package provides a simple open source Python package for EEG microstate segmentation.

python-bycycle 1.2.0
Propagated dependencies: python-matplotlib@3.10.8 python-neurodsp@2.3.0 python-numpy@2.3.1 python-pandas@2.3.3 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://bycycle-tools.github.io/
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Cycle-by-cycle analyses of neural oscillations
Description:

bycycle is a tool for quantifying features of neural oscillations in the time domain, as opposed to the frequency domain, using a cycle-by-cycle approach.

python-hedvis 0.1.1
Propagated dependencies: python-hedtools@1.1.0 python-matplotlib@3.10.8 python-numpy@2.3.1 python-pandas@2.3.3 python-pillow@12.1.1 python-wordcloud@1.9.6
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://www.hedtags.org/
Licenses: Expat
Build system: pyproject
Synopsis: Visualization tools for Hierarchical Event Descriptors
Description:

This package provides HED validation, summary, and analysis tools for annotating events and experimental metadata.

python-pyxdf 1.17.1
Propagated dependencies: python-numpy@2.3.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/xdf-modules/pyxdf
Licenses: FreeBSD
Build system: pyproject
Synopsis: Python library for importing XDF (Extensible Data Format)
Description:

XDF is a general-purpose container format for multi-channel time series data with extensive associated meta information. XDF is tailored towards biosignal data such as EEG, EMG, EOG, ECG, GSR, MEG, but it can also handle data with high sampling rate (like audio) or data with a high number of channels (like fMRI or raw video). Meta information is stored as XML.

python-mnextend 0.2.2
Propagated dependencies: onnx@1.17.0 python-edfio@0.4.10 python-matplotlib@3.10.8 python-mne@1.11.0 python-numpy@2.3.1 python-pybv@0.7.6 python-pybvrf@0.1.4 python-pyxdf@1.17.1 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/cbrnr/mnextend
Licenses: Modified BSD
Build system: pyproject
Synopsis: Additional functionality for MNE-Python
Description:

This package provides additional functionality for working with MNE-Python, the most popular Python package for processing electrophysiological data (EEG, MEG, ...).

Features:

  • Reading additional file formats

  • Inspecting files before reading

  • Writing raw data

  • ICLabel classification

openmeeg 2.5.15
Dependencies: hdf5@1.14.6 matio@1.5.23 openblas@0.3.31 vtk@9.6.0
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://openmeeg.github.io
Licenses: CeCILL-B
Build system: cmake
Synopsis: Forward problems solver in the field of EEG and MEG
Description:

The OpenMEEG software is a C++ package for solving the forward problems of electroencephalography (EEG) and magnetoencephalography (MEG).

python-conpy 1.3.2
Propagated dependencies: python-h5io@0.2.5 python-h5py@3.15.1 python-mne@1.11.0 python-mne-connectivity@0.7 python-seaborn@0.13.2 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://aaltoimaginglanguage.github.io/conpy/
Licenses: Modified BSD
Build system: pyproject
Synopsis: Power mapping and functional connectivity analysis in Python
Description:

This package provides a Python library implementing the DICS beamformer for connectivity analysis and power mapping on the cortex.

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