This package provides portable access from R to biomedical image processing toolbox ANTs by Avants et al. (2009) <doi:10.54294/uvnhin> via seamless integration with the Python implementation ANTsPy'. Allows biomedical images to be processed in Python and analyzed in R', and vice versa via shared memory. See citation("rpyANTs") for more reference information.

Interface to the UNU.RAN library for Universal Non-Uniform RANdom variate generators. Thus it allows to build non-uniform random number generators from quite arbitrary distributions. In particular, it provides an algorithm for fast numerical inversion for distribution with given density function. In addition, the package contains densities, distribution functions and quantiles from a couple of distributions.

Opens complete record(s) with .gb extension from the NCBI/GenBank Nucleotide database and returns a list containing shaped record(s). These kind of files contains detailed records of DNA samples (locus, organism, type of sequence, source of the sequence...). An example of record can be found at <https://www.ncbi.nlm.nih.gov/nuccore/HE799070>.

This package provides statistical tools for evaluating how covariates influence the strength of Pearson correlation coefficients between two response variables. Supports bivariate normal and bivariate binary responses, with likelihood-based inference and bootstrap-based significance testing. The methodology is based on Dufera, Liu and Xu (2023) "Regression models of Pearson correlation coefficient" <doi:10.1080/24754269.2023.2164970>.

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Ribotaper is a method for defining translated open reading frames (ORFs) using ribosome profiling (ribo-seq) data. This package provides the Ribotaper pipeline.

This package provides a computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.

This package provides an implementation of chunked, compressed, N-dimensional arrays for R, Zarr specification version 2 (2024) <doi:10.5281/zenodo.11320255>.

This package provides a fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.

This package provides tools for the calibration of penalized criteria for model selection. The calibration methods available are based on the slope heuristics.

The package provides estimators of the mode of univariate unimodal (and sometimes multimodal) data and values of the modes of usual probability distributions.

This package provides with toolkits to implement a full singIST analysis with pseudobulked Seurat objects of disease models and human data.

Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.

Propose a parametric fit for censored linear regression models based on SMSN distributions, from a Bayesian perspective. Also, generates SMSN random variables.

Check for namespace collisions between a string input (your function or package name) and half a million packages and functions on CRAN.

This package provides a simple syntax to change the default values for function arguments, whether they are in packages or defined locally.

Item focussed recursive partitioning for simultaneous selection of items and variables that induce Differential Item Functioning (DIF) in dichotomous or polytomous items.

Infer the adjacency matrix of a network from time course data using an empirical Bayes estimation procedure based on Dynamic Bayesian Networks.

Deliver the full functionality of ECharts with minimal overhead. echarty users build R lists for ECharts API. Lean set of powerful commands.

This package provides tools for fitting the Extended Empirical Saddlepoint (EES) density of Fasiolo et al. (2018) <doi:10.1214/18-EJS1433>.

Intended for both technical and non-technical users to create interactive data visualizations through a web browser GUI without writing any code.

This package provides access to datasets published by Hlà daÄ státu <https://www.hlidacstatu.cz/>, a Czech watchdog, via their API.

Helper functions and example data sets to facilitate the estimation of IRTree models from data with different shape and using different software.

This package provides a calculation tool to obtain the 5-year or 10-year risk of cardiovascular disease from various risk models.